diff --git a/Makefile.in b/Makefile.in
deleted file mode 100644
index 6dc04bdd..00000000
--- a/Makefile.in
+++ /dev/null
@@ -1,106 +0,0 @@
-CXX = @CXX@
-CXXFLAGS = @CXXFLAGS@
-CPPFLAGS = @CPPFLAGS@ @DEFS@
-LDFLAGS = @LDFLAGS@
-
-FLEX = @FLEX@
-BISON = @BISON@
-
-DYNARE_M = dynare_m@EXEEXT@
-
-MAIN_OBJS = \
-	DynareFlex.o \
-	DynareBison.o \
-	ComputingTasks.o \
-	ModelTree.o \
-	StaticModel.o \
-	StaticDllModel.o \
-	DynamicModel.o \
-	NumericalConstants.o \
-	NumericalInitialization.o \
-	Shocks.o \
-	SigmaeInitialization.o \
-	SymbolTable.o \
-	SymbolList.o \
-	ParsingDriver.o \
-	DataTree.o \
-	ModFile.o \
-	Statement.o \
-	ExprNode.o \
-	MinimumFeedbackSet.o \
-	IncidenceMatrix.o \
-	BlockTriangular.o \
-	DynareMain.o \
-	DynareMain2.o
-
-MACRO_OBJS = \
-	macro/MacroFlex.o \
-	macro/MacroBison.o \
-	macro/MacroDriver.o \
-	macro/MacroValue.o
-
-
-# Build rules
-
-.PHONY: all
-all: $(DYNARE_M)
-
-$(DYNARE_M): $(MAIN_OBJS) $(MACRO_OBJS)
-	$(CXX) $(CXXFLAGS) $(LDFLAGS) -o $(DYNARE_M) $(MAIN_OBJS) $(MACRO_OBJS)
-	cp $(DYNARE_M) ../matlab/
-
-
-# Build rules for Flex and Bison files
-
-DynareFlex.cc: DynareFlex.ll
-	$(FLEX) -oDynareFlex.cc DynareFlex.ll
-
-DynareBison.cc DynareBison.hh location.hh stack.hh position.hh: DynareBison.yy
-	$(BISON) --verbose -o DynareBison.cc DynareBison.yy
-
-macro/MacroFlex.cc: macro/MacroFlex.ll
-	cd macro && $(FLEX) -oMacroFlex.cc MacroFlex.ll
-
-macro/MacroBison.cc macro/MacroBison.hh macro/location.hh macro/stack.hh macro/position.hh: macro/MacroBison.yy
-	cd macro && $(BISON) --verbose -o MacroBison.cc MacroBison.yy
-
-
-# Dependencies
-
-%.d: %.cc DynareBison.hh macro/MacroBison.hh
-	@set -e; rm -f $@; \
-	 $(CXX) -MM $(CPPFLAGS) $< > $@.$$$$; \
-	 sed 's,\($*\)\.o[ :]*,\1.o $@ : ,g' < $@.$$$$ > $@; \
-	 rm -f $@.$$$$
-
--include $(MAIN_OBJS:.o=.d)
--include $(MACRO_OBJS:.o=.d)
-
-
-# Clean
-
-.PHONY: clean
-clean:
-	rm -f *.o *.d *~ \
-		DynareFlex.cc \
-		DynareBison.output \
-		DynareBison.cc \
-		position.hh \
-		stack.hh \
-		location.hh \
-		DynareBison.hh \
-		$(DYNARE_M)
-	cd macro && rm -f *.o *.d *~ \
-		MacroFlex.cc \
-		MacroBison.output \
-		MacroBison.cc \
-		MacroBison.hh \
-		location.hh \
-		stack.hh \
-		position.hh
-
-
-# Recreate Makefile when necessary
-
-Makefile: Makefile.in ../config.status
-	cd .. && ./config.status