function redform_map(dirname)
%function redform_map(dirname)
% inputs (from opt_gsa structure
% anamendo    = options_gsa_.namendo;
% anamlagendo = options_gsa_.namlagendo;
% anamexo     = options_gsa_.namexo;
% iload       = options_gsa_.load_redform;
% pprior      = options_gsa_.pprior;
% ilog        = options_gsa_.logtrans_redform;
% threshold   = options_gsa_.threshold_redform;
% ksstat      = options_gsa_.ksstat_redform;
% alpha2      = options_gsa_.alpha2_redform;
%
% Written by Marco Ratto
% Joint Research Centre, The European Commission,
% (http://eemc.jrc.ec.europa.eu/),
% marco.ratto@jrc.it 
%
% Reference:
% M. Ratto, Global Sensitivity Analysis for Macroeconomic models, MIMEO, 2006.

% Copyright (C) 2012 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare.  If not, see <http://www.gnu.org/licenses/>.


global M_ oo_ estim_params_ options_ bayestopt_

options_gsa_ = options_.opt_gsa;

anamendo = options_gsa_.namendo;
anamlagendo = options_gsa_.namlagendo;
anamexo = options_gsa_.namexo;
iload = options_gsa_.load_redform;
pprior = options_gsa_.pprior;
ilog = options_gsa_.logtrans_redform;
threshold = options_gsa_.threshold_redform;
ksstat = options_gsa_.ksstat_redform;
alpha2 = options_gsa_.alpha2_redform;

pnames = M_.param_names(estim_params_.param_vals(:,1),:);
if nargin==0,
  dirname='';
end

if pprior
  load([dirname,'/',M_.fname,'_prior']);
  adir=[dirname '/redform_stab'];
else
  load([dirname,'/',M_.fname,'_mc']);
  adir=[dirname '/redform_mc'];
end
if ~exist('T')
  stab_map_(dirname);
if pprior
  load([dirname,'/',M_.fname,'_prior'],'T');
else
  load([dirname,'/',M_.fname,'_mc'],'T');
end
end
if isempty(dir(adir))
  mkdir(adir)
end
adir0=pwd;
%cd(adir)

nspred=size(T,2)-M_.exo_nbr;
x0=lpmat(istable,:);
[kn, np]=size(x0);
offset = length(bayestopt_.pshape)-np;
if options_gsa_.prior_range,
  pshape=5*(ones(np,1));
  pd =  [NaN(np,1) NaN(np,1) bayestopt_.lb(offset+1:end) bayestopt_.ub(offset+1:end)];
else
  pshape = bayestopt_.pshape(offset+1:end);
  pd =  [bayestopt_.p6(offset+1:end) bayestopt_.p7(offset+1:end) bayestopt_.p3(offset+1:end) bayestopt_.p4(offset+1:end)];
end

nsok = length(find(M_.lead_lag_incidence(M_.maximum_lag,:)));
clear lpmat lpmat0 egg iunstable yys
js=0;
for j=1:size(anamendo,1)
  namendo=deblank(anamendo(j,:));
  iendo=strmatch(namendo,M_.endo_names(oo_.dr.order_var,:),'exact');
  ifig=0;
  iplo=0;
  for jx=1:size(anamexo,1)
    namexo=deblank(anamexo(jx,:));
    iexo=strmatch(namexo,M_.exo_names,'exact');

    if ~isempty(iexo),
      %y0=squeeze(T(iendo,iexo+nspred,istable));
      y0=squeeze(T(iendo,iexo+nspred,:));
      if (max(y0)-min(y0))>1.e-10,
        if mod(iplo,9)==0,
          ifig=ifig+1;
          hfig = figure('name',[namendo,' vs. shocks ',int2str(ifig)]);
          iplo=0;
        end
        iplo=iplo+1;
        js=js+1;
        xdir0 = [adir,'/',namendo,'_vs_', namexo];
        if ilog==0,
          if isempty(threshold)
            si(:,js) = redform_private(x0, y0, pshape, pd, iload, pnames, namendo, namexo, xdir0);
          else
            iy=find( (y0>threshold(1)) & (y0<threshold(2)));
            iyc=find( (y0<=threshold(1)) | (y0>=threshold(2)));
            xdir = [xdir0,'_cut'];
            if ~isempty(iy),
              si(:,js) = redform_private(x0(iy,:), y0(iy), pshape, pd, iload, pnames, namendo, namexo, xdir);
            end
            if ~isempty(iy) & ~isempty(iyc)
            delete([xdir, '/*cut*.*'])
            [proba, dproba] = stab_map_1(x0, iy, iyc, 'cut',0);
            indsmirnov = find(dproba>ksstat);
            stab_map_1(x0, iy, iyc, 'cut',1,indsmirnov,xdir);
            stab_map_2(x0(iy,:),alpha2,'cut',xdir)
            stab_map_2(x0(iyc,:),alpha2,'trim',xdir)
            end
          end
        else
          [yy, xdir] = log_trans_(y0,xdir0);
          silog(:,js) = redform_private(x0, yy, pshape, pd, iload, pnames, namendo, namexo, xdir);
        end

        figure(hfig)
        subplot(3,3,iplo),
        if ilog,
          [saso, iso] = sort(-silog(:,js));
          bar([silog(iso(1:min(np,10)),js)])
          logflag='log';
        else
          [saso, iso] = sort(-si(:,js));
          bar(si(iso(1:min(np,10)),js))
          logflag='';
        end
        %set(gca,'xticklabel',pnames(iso(1:min(np,10)),:),'fontsize',8)
        set(gca,'xticklabel',' ','fontsize',10)
        set(gca,'xlim',[0.5 10.5])
        for ip=1:min(np,10),
          text(ip,-0.02,deblank(pnames(iso(ip),:)),'rotation',90,'HorizontalAlignment','right','interpreter','none')
        end
        title([logflag,' ',namendo,' vs. ',namexo],'interpreter','none')
        if iplo==9,
          saveas(gcf,[dirname,'/',M_.fname,'_redform_', namendo,'_vs_shocks_',logflag,num2str(ifig)])
          eval(['print -depsc2 ' dirname,'/',M_.fname,'_redform_', namendo,'_vs_shocks_',logflag,num2str(ifig)]);
          eval(['print -dpdf ' dirname,'/',M_.fname,'_redform_', namendo,'_vs_shocks_',logflag,num2str(ifig)]);
          close(gcf)
        end
      
      end
    end
  end
  if iplo<9 & iplo>0 & ifig,
    saveas(gcf,[dirname,'/',M_.fname,'_redform_', namendo,'_vs_shocks_',logflag,num2str(ifig)])
    eval(['print -depsc2 ' dirname,'/',M_.fname,'_redform_', namendo,'_vs_shocks_',logflag,num2str(ifig)]);
    eval(['print -dpdf ' dirname,'/',M_.fname,'_redform_', namendo,'_vs_shocks_',logflag,num2str(ifig)]);
    close(gcf)
  end
  ifig=0;
  iplo=0;
  for je=1:size(anamlagendo,1)
    namlagendo=deblank(anamlagendo(je,:));
    ilagendo=strmatch(namlagendo,M_.endo_names(oo_.dr.order_var(oo_.dr.nstatic+1:oo_.dr.nstatic+nsok),:),'exact');

    if ~isempty(ilagendo),
      %y0=squeeze(T(iendo,ilagendo,istable));
      y0=squeeze(T(iendo,ilagendo,:));
      if (max(y0)-min(y0))>1.e-10,
        if mod(iplo,9)==0,
          ifig=ifig+1;
          hfig = figure('name',[namendo,' vs. lags ',int2str(ifig)]);
          iplo=0;
        end
        iplo=iplo+1;
        js=js+1;
        xdir0 = [adir,'/',namendo,'_vs_', namlagendo];
        if ilog==0,
        if isempty(threshold)
          si(:,js) = redform_private(x0, y0, pshape, pd, iload, pnames, namendo, namlagendo, xdir0);
        else
          iy=find( (y0>threshold(1)) & (y0<threshold(2)));
          iyc=find( (y0<=threshold(1)) | (y0>=threshold(2)));
          xdir = [xdir0,'_cut'];
          if ~isempty(iy)
          si(:,js) = redform_private(x0(iy,:), y0(iy), pshape, pd, iload, pnames, namendo, namlagendo, xdir);
          end
          if ~isempty(iy) & ~isempty(iyc),
          delete([xdir, '/*cut*.*'])
          [proba, dproba] = stab_map_1(x0, iy, iyc, 'cut',0);
          indsmirnov = find(dproba>ksstat);
          stab_map_1(x0, iy, iyc, 'cut',1,indsmirnov,xdir);
          stab_map_2(x0(iy,:),alpha2,'cut',xdir)
          stab_map_2(x0(iyc,:),alpha2,'trim',xdir)
          end
        end
        else
          [yy, xdir] = log_trans_(y0,xdir0);
          silog(:,js) = redform_private(x0, yy, pshape, pd, iload, pnames, namendo, namlagendo, xdir);
        end

        figure(hfig),
        subplot(3,3,iplo),
        if ilog,
          [saso, iso] = sort(-silog(:,js));
          bar([silog(iso(1:min(np,10)),js)])
          logflag='log';
        else
          [saso, iso] = sort(-si(:,js));
          bar(si(iso(1:min(np,10)),js))
          logflag='';
        end
        %set(gca,'xticklabel',pnames(iso(1:min(np,10)),:),'fontsize',8)
        set(gca,'xticklabel',' ','fontsize',10)
        set(gca,'xlim',[0.5 10.5])
        for ip=1:min(np,10),
          text(ip,-0.02,deblank(pnames(iso(ip),:)),'rotation',90,'HorizontalAlignment','right','interpreter','none')
        end
        title([logflag,' ',namendo,' vs. ',namlagendo,'(-1)'],'interpreter','none')
        if iplo==9,
          saveas(gcf,[dirname,'/',M_.fname,'_redform_', namendo,'_vs_lags_',logflag,num2str(ifig)])
          eval(['print -depsc2 ' dirname,'/',M_.fname,'_redform_', namendo,'_vs_lags_',logflag,num2str(ifig)]);
          eval(['print -dpdf ' dirname,'/',M_.fname,'_redform_', namendo,'_vs_lags_',logflag,num2str(ifig)]);
          close(gcf)
        end
      
      end
    end
  end
  if iplo<9 & iplo>0 & ifig,
    saveas(gcf,[dirname,'/',M_.fname,'_redform_', namendo,'_vs_lags_',logflag,num2str(ifig)])
    eval(['print -depsc2 ' dirname,'/',M_.fname,'_redform_', namendo,'_vs_lags_',logflag,num2str(ifig)]);
    eval(['print -dpdf ' dirname,'/',M_.fname,'_redform_', namendo,'_vs_lags_',logflag,num2str(ifig)]);
    close(gcf)
  end
end

if ilog==0,
figure, %bar(si)
% boxplot(si','whis',10,'symbol','r.')
myboxplot(si',[],'.',[],10)
xlabel(' ')
set(gca,'xticklabel',' ','fontsize',10,'xtick',[1:np])
set(gca,'xlim',[0.5 np+0.5])
set(gca,'ylim',[0 1])
set(gca,'position',[0.13 0.2 0.775 0.7])
for ip=1:np,
  text(ip,-0.02,deblank(pnames(ip,:)),'rotation',90,'HorizontalAlignment','right','interpreter','none')
end
title('Reduced form GSA')

saveas(gcf,[dirname,'/',M_.fname,'_redform_gsa'])
eval(['print -depsc2 ' dirname,'/',M_.fname,'_redform_gsa']);
eval(['print -dpdf ' dirname,'/',M_.fname,'_redform_gsa']);

else
figure, %bar(silog)
% boxplot(silog','whis',10,'symbol','r.')
myboxplot(silog',[],'.',[],10)
set(gca,'xticklabel',' ','fontsize',10,'xtick',[1:np])
xlabel(' ')
set(gca,'xlim',[0.5 np+0.5])
set(gca,'ylim',[0 1])
set(gca,'position',[0.13 0.2 0.775 0.7])
for ip=1:np,
  text(ip,-0.02,deblank(pnames(ip,:)),'rotation',90,'HorizontalAlignment','right','interpreter','none')
end
title('Reduced form GSA - Log-transformed elements')

saveas(gcf,[dirname,'/',M_.fname,'_redform_gsa_log'])
eval(['print -depsc2 ' dirname,'/',M_.fname,'_redform_gsa_log']);
eval(['print -dpdf ' dirname,'/',M_.fname,'_redform_gsa_log']);

end
function si  = redform_private(x0, y0, pshape, pd, iload, pnames, namy, namx, xdir)
global bayestopt_ options_

opt_gsa=options_.opt_gsa;
np=size(x0,2);
x00=x0;
  if opt_gsa.prior_range,
    for j=1:np,
      x0(:,j)=(x0(:,j)-pd(j,3))./(pd(j,4)-pd(j,3));
    end
  else
    x0=priorcdf(x0,pshape, pd(:,1), pd(:,2), pd(:,3), pd(:,4));
  end

fname=[xdir,'/map'];
if iload==0,
  figure, hist(y0,30), title([namy,' vs. ', namx])
  if isempty(dir(xdir))
    mkdir(xdir)
  end
  saveas(gcf,[xdir,'/', namy,'_vs_', namx])
  eval(['print -depsc2 ' xdir,'/', namy,'_vs_', namx]);
  eval(['print -dpdf ' xdir,'/', namy,'_vs_', namx]);
  close(gcf)
%   gsa_ = gsa_sdp_dyn(y0, x0, -2, [],[],[],1,fname, pnames);
  nrun=length(y0);
  nest=min(250,nrun);
  nfit=min(1000,nrun);
%   dotheplots = (nfit<=nest);
  gsa_ = gsa_sdp(y0(1:nest), x0(1:nest,:), 2, [],[-1 -1 -1 -1 -1 0],[],0,[fname,'_est'], pnames);
  if nfit>nest,
    gsa_ = gsa_sdp(y0(1:nfit), x0(1:nfit,:), -2, gsa_.nvr*nest^3/nfit^3,[-1 -1 -1 -1 -1 0],[],0,fname, pnames);
  end
  save([fname,'.mat'],'gsa_')
  [sidum, iii]=sort(-gsa_.si);
  gsa_.x0=x00(1:nfit,:);
  hfig=gsa_sdp_plot(gsa_,fname,pnames,iii(1:min(12,np)));
  close(hfig);
  gsa_.x0=x0(1:nfit,:);
%   copyfile([fname,'_est.mat'],[fname,'.mat'])
  figure, 
  plot(y0(1:nfit),[gsa_.fit y0(1:nfit)],'.'), 
  title([namy,' vs. ', namx,' fit'])
  saveas(gcf,[xdir,'/', namy,'_vs_', namx,'_fit'])
  eval(['print -depsc2 ' xdir,'/', namy,'_vs_', namx,'_fit']);
  eval(['print -dpdf ' xdir,'/', namy,'_vs_', namx,'_fit']);
  close(gcf)
  if nfit<nrun,
    npred=[nfit+1:nrun];
  yf = ss_anova_fcast(x0(npred,:), gsa_);
  figure, 
  plot(y0(npred),[yf y0(npred)],'.'), 
  title([namy,' vs. ', namx,' pred'])
  saveas(gcf,[xdir,'/', namy,'_vs_', namx,'_pred'])
  eval(['print -depsc2 ' xdir,'/', namy,'_vs_', namx,'_pred']);
  eval(['print -dpdf ' xdir,'/', namy,'_vs_', namx,'_pred']);
  close(gcf)
  end
else
%   gsa_ = gsa_sdp_dyn(y0, x0, 0, [],[],[],0,fname, pnames);
  gsa_ = gsa_sdp(y0, x0, 0, [],[],[],0,fname, pnames);
  yf = ss_anova_fcast(x0, gsa_);
  figure, 
  plot(y0,[yf y0],'.'), 
  title([namy,' vs. ', namx,' pred'])
  saveas(gcf,[xdir,'/', namy,'_vs_', namx,'_pred'])
  eval(['print -depsc2 ' xdir,'/', namy,'_vs_', namx,'_pred']);
  eval(['print -dpdf ' xdir,'/', namy,'_vs_', namx,'_pred']);
  close(gcf)
end
% si = gsa_.multivariate.si;
si = gsa_.si;