Johannes Pfeifer
709ef9230f
get_the_name.m: do not pass full options structure as input
2023-12-07 12:11:38 +01:00
Johannes Pfeifer
e718402357
mode_check.m: fix LaTeX output on Windows by using slash
2023-11-27 14:19:13 +01:00
Willi Mutschler
330b10ec85
cosmetical changes to headers and comments
2023-09-19 13:26:33 +02:00
Willi Mutschler
c8be1a3274
Refactor mode_check codes
2023-09-19 13:26:33 +02:00
Sébastien Villemot
10af04c6d8
Use Unicode copyright symbol (in UTF-8 encoding) in all source files
...
It is now supported by the MATLAB editor (as of R2022a).
The old ASCII notation is left in some files that we copy as-is from other
sources (e.g. in the contrib/ and m4/ subdirectories).
The particles submodule is not updated at this point, because it is in an
inconsistent state.
[skip ci]
2022-04-13 14:54:25 +02:00
Johannes Pfeifer
c72d7e0ffd
mode_check.m: have debug mode provide explicit message instead of just the code
2021-10-25 16:54:34 +02:00
Johannes Pfeifer
459fce927b
mode_check.m: take care of almost binding bounds
2021-08-20 13:29:37 +02:00
Johannes Pfeifer
58b336b263
mode_check.m: fix logical condition that may otherwise lead to 0 size of interval
2021-08-20 13:09:06 +02:00
Sébastien Villemot
766fff88f6
Use secure URL for link to GNU licenses
2021-06-09 17:35:05 +02:00
Johannes Pfeifer
da3943beba
Make sure output is saved in dname-folder
...
That's where other functions are looking for them
2020-12-16 22:41:55 +01:00
Johannes Pfeifer
312d053ae1
Use LaTeX labels in figures
2020-06-17 21:48:25 +02:00
Sébastien Villemot
49dc997073
Global reindentation of MATLAB code (excluding submodules)
...
Also convert to Unix end-of-lines, and remove trailing whitespaces.
2019-12-20 16:30:27 +01:00
Johannes Pfeifer
8e5fd8dc4e
Move creation of subfolder outside of TeX-check
...
Required if we only want the figure
2019-11-21 11:58:16 +01:00
Johannes Pfeifer
a59534a284
Move remaining figures and related TeX output from main folder to graphs
2019-11-21 10:14:48 +01:00
Sébastien Villemot
89a3e94cbf
Use true/false instead of 1/0 for boolean options
...
This is more elegant, and makes it easier to distinguish them from integer
options.
Also simplify test expressions for these boolean options.
2019-03-19 15:21:16 +01:00
Johannes Pfeifer
ef797eec0f
mode_check.m: account for case where bounds are infinite and not plots are shown
2018-01-24 23:21:10 +01:00
Johannes Pfeifer
86e646488c
mode_check.m: fix case where parameter is exactly 0
...
In this case, interval length was 0, crashing the plotting
2017-10-04 16:49:09 +02:00
Stéphane Adjemian (Charybdis)
5417b27ac7
Fixed indentation of matlab files.
2017-05-16 15:10:20 +02:00
Stéphane Adjemian (Charybdis)
88e1701289
Removed useless commas and semicolons.
2017-05-16 13:24:46 +02:00
Houtan Bastani
e5f1d20221
change dyn_figure to take a nodisplay and graph_format arguments as opposed to options_. closes #1415
2017-03-23 17:59:05 +01:00
Houtan Bastani
2aa85f978a
change dyn_figure to take a nodisplay argument as opposed to options_. #1415
2017-03-23 14:30:16 +01:00
Johannes Pfeifer
6b82788180
Display reason for mode_check-problems when debugging is enabled
2016-10-09 22:16:26 +02:00
Houtan Bastani
2a6b3caa34
when saving, use .mat file extension because Octave doesn’t support it by default
2016-09-26 11:00:41 +02:00
Johannes Pfeifer
46450c6f1f
Change textwidth depending on number of subplots
...
Prevents overblown figures
2016-08-23 17:22:41 +02:00
Johannes Pfeifer
73afe7d02f
Change fixed LaTeX figure width into \textwidth scaling
...
Improves readability
2016-08-23 17:22:41 +02:00
Johannes Pfeifer
329b91d717
Harmonize output of objective functions
...
Closes #1149
Mirrors 1ad8df4635
2016-06-15 00:30:28 +02:00
Houtan Bastani
b454c28096
fix latex compilation on linux. #1207
2016-06-14 11:37:16 +02:00
Johannes Pfeifer
09e03e7a6f
Move closing of file in mode_check.m out of the loop
...
Code will otherwise crash with more than one figure to plot.
2015-11-28 14:07:36 +01:00
Michel Juillard
035adeb89e
Revert "More fixing related to objective_function_penalty_base"
...
This reverts commit 1ad8df4635
.
2015-10-09 14:23:31 +02:00
Michel Juillard
1ad8df4635
More fixing related to objective_function_penalty_base
2015-10-08 20:57:00 +02:00
Johannes Pfeifer
ee66f892ca
Add missing fclose to mode_check.m
2015-08-17 14:42:52 +02:00
MichelJuillard
f94910173d
Merge pull request #937 from JohannesPfeifer/graph_fix
...
Various fixes related to graphs and eps-TeX-loaders
2015-07-20 14:36:20 +02:00
Stéphane Adjemian (Lupi)
29589c062f
Moved mode_check data file (see commit fe41b64c84
) in a subfolder.
2015-07-08 17:18:27 +02:00
Stéphane Adjemian (Lupi)
fe41b64c84
Save on disk the data produced by mode_check.
2015-07-08 16:05:38 +02:00
Johannes Pfeifer
bcc1008d3d
Only create eps-loaders if eps-figures have been created (leaves table TeX-output unaffected)
2015-06-08 17:57:15 +02:00
Johannes Pfeifer
3c3b255025
Clarify that output of mode_check.m is minus likelihood/posterior
2015-05-11 17:39:26 +02:00
Johannes Pfeifer
e76f81740f
Make sure that no variable is named hessian.
2015-05-10 08:17:40 +02:00
Johannes Pfeifer
8cc9fbd69a
Remove hard-coded coloring of legend in mode_check.m
...
Now displays correct colors with new Matlab plot interface (>2014a)
2015-04-02 20:52:49 +02:00
Stéphane Adjemian (Karaba)
f48566aeae
Fixed prior bounds (according to the doc in master branch).
...
* Second and third positional arguments after the name of the
estimated parameter in the estimated_params block are only
considered in the optimization stage (not in the MCMC)
* Do not store bounds in bayestopt_, because bounds do not always
reflect restrictions implied by prior shapes.
* prior_bounds routine returns a structure (with fields lb and ub)
instead of a matrix.
2014-10-20 16:18:54 +02:00
Stéphane Adjemian (Charybdis)
880bb58aef
Fixed mode_check and prior_posterior_statistics routines (added dataset_info as an input).
2014-06-17 10:19:07 +02:00
Stéphane Adjemian (Charybdis)
ddd95361ba
Cosmetic changes. Added isoctave function to replace exist('OCTAVE_VERSION').
2013-11-04 10:54:45 +01:00
Sébastien Villemot
b4f8532bea
Merge pull request #441 from JohannesPfeifer/mode_check
...
Bugfix for mode_check and display of parameters out of bounds
2013-08-12 03:31:50 -07:00
Stéphane Adjemian (Charybdis)
4052d4ccaf
Cosmetic changes. Use skipline() instead of disp(' ').
2013-07-10 17:12:34 +02:00
Johannes Pfeifer
ea5d2e90b2
Take care of parameter estimates at prior bounds in check plots
...
Symmetric plots for parameters at the prior bounds resulted in nothing being printed. This commit then switches to asymmetric plots for those parameters and plots a red line signifying the bound.
2013-07-05 23:46:05 +02:00
Stéphane Adjemian (Charybdis)
340bcc2739
Added an option for setting the number of points where the posterior kernel is evaluated when using mode_check. Reorganized the options_ global structure wrt mode_check.
2013-06-20 17:19:44 +02:00
Stéphane Adjemian (Charybdis)
39ef86f118
Partially reverted commit 06237375db
.
2013-06-18 22:30:49 +02:00
Frédéric Karamé
06237375db
Added the possibility to set the number of points in mode_check for computing the transversal cuts.
2013-06-18 16:16:56 +02:00
Sébastien Villemot
61485ab809
Fix copyright notices
2013-06-12 17:04:46 +02:00
Marco Ratto
26602ecf3c
Bug fix for negative values of x(kk)
2013-05-27 12:00:39 +02:00
Marco Ratto
7bef23f1b3
Allow asymmetric mode check plots, using the new option
...
mode_check_symmetric_plots (=1 at default, i.e. current behaviour)
2013-05-23 11:37:00 +02:00