Johannes Pfeifer
709ef9230f
get_the_name.m: do not pass full options structure as input
2023-12-07 12:11:38 +01:00
Johannes Pfeifer
d0e99daf9a
mcmc_diagnostics.m: compute Geweke and Raftery/Lewis also with more than one chain
2023-11-23 16:59:02 +01:00
Johannes Pfeifer
879d92fbf8
Move many functions towards consistent naming
...
Related to #1776
2023-10-24 22:21:15 +02:00
Willi Mutschler
9a4e022eb7
remove global from GetAllPosteriorDraws
2023-09-19 13:26:33 +02:00
Willi Mutschler
268d511e29
estimation: better organize files into folders (latex,graphs,output)
2023-09-19 13:26:33 +02:00
Willi Mutschler
8f650a9cca
Put raftery lewis convergence under oo_.convergence
2023-09-19 13:26:33 +02:00
Johannes Pfeifer
74399f0728
🐛 fix check for Metropolis folder
2023-09-08 10:31:09 +02:00
Johannes Pfeifer
bd905360e0
Slice: provide convergence diagnostics even for low number of draws
2023-09-08 10:26:21 +02:00
Willi Mutschler
2e742462b3
Rename McMCDiagnostics and McMCDiagnostics_core
2023-09-08 09:44:43 +02:00
Willi Mutschler
960c075420
Replace "Estimation::mcmc::" by a variable
...
This enables re-using estimation functions for other Bayesian estimation routines such as Bayesian method_of_moments and printing it nicer to the console.
2023-09-07 09:36:27 +02:00
Johannes Pfeifer
8532d6abd7
Cosmetic changes to various estimation routines
2023-07-13 14:40:01 -04:00
Johannes Pfeifer
e6c43c2a29
load_last_mh_history_file: make sure number of blocks and parameters matches loaded files
2023-07-13 14:39:50 -04:00
William Gatt
eb5eefdcf0
Variable number of parameter MCMC convergence plots
...
This change allows the user to change the number of parameters for which the MCMC convergence diagnostics are shown. The user needs to set a value for options_.convergence.brooksgelman.plotrows for an arbitrary number of parameters to be shown, but defaulting to 3 if no input is supplied.
2023-07-05 10:07:38 +00:00
Sébastien Villemot
10af04c6d8
Use Unicode copyright symbol (in UTF-8 encoding) in all source files
...
It is now supported by the MATLAB editor (as of R2022a).
The old ASCII notation is left in some files that we copy as-is from other
sources (e.g. in the contrib/ and m4/ subdirectories).
The particles submodule is not updated at this point, because it is in an
inconsistent state.
[skip ci]
2022-04-13 14:54:25 +02:00
Sébastien Villemot
766fff88f6
Use secure URL for link to GNU licenses
2021-06-09 17:35:05 +02:00
Johannes Pfeifer
312d053ae1
Use LaTeX labels in figures
2020-06-17 21:48:25 +02:00
Johannes Pfeifer
14ef010b9e
geweke_moments.m: correctly use parameter instead of hard-coded value
2020-02-16 12:14:04 +01:00
Sébastien Villemot
49dc997073
Global reindentation of MATLAB code (excluding submodules)
...
Also convert to Unix end-of-lines, and remove trailing whitespaces.
2019-12-20 16:30:27 +01:00
Stéphane Adjemian (Scylla)
7be8f10e0e
Use cells of strings instead of char arrays.
2018-01-09 22:30:01 +01:00
Stéphane Adjemian (Charybdis)
1bf81c9f5a
Fixed copyright notices.
2017-05-18 18:36:38 +02:00
Stéphane Adjemian (Charybdis)
5417b27ac7
Fixed indentation of matlab files.
2017-05-16 15:10:20 +02:00
Stéphane Adjemian (Charybdis)
a53636e24e
Fixed copyright notices.
2017-05-16 14:11:15 +02:00
Stéphane Adjemian (Charybdis)
88e1701289
Removed useless commas and semicolons.
2017-05-16 13:24:46 +02:00
Houtan Bastani
e5f1d20221
change dyn_figure to take a nodisplay and graph_format arguments as opposed to options_. closes #1415
2017-03-23 17:59:05 +01:00
Houtan Bastani
2aa85f978a
change dyn_figure to take a nodisplay argument as opposed to options_. #1415
2017-03-23 14:30:16 +01:00
Johannes Pfeifer
5515da191a
Add Raftery/Lewis (1992) convergence diagnostics
2016-12-17 17:22:05 +01:00
Johannes Pfeifer
c03fa143f7
Fix printout of comment in McMCDiagnostics.m
2016-12-17 17:22:05 +01:00
Johannes Pfeifer
d6d517c4c9
Move MCMC diagnostics files to separated folder
2016-12-17 17:22:04 +01:00