Commit Graph

6663 Commits (c9bdc2c8855233b097506bae6fe1af8898d53916)

Author SHA1 Message Date
Sébastien Villemot 552c40cfc4
Update dseries and m-unit-tests submodules 2018-12-12 14:48:50 +01:00
Sébastien Villemot 139e922c0f
No longer downoald x13 binary within CI
The binary is now picked from the Debian package.
2018-12-12 11:06:20 +01:00
Sébastien Villemot d2c10f216b
Update dseries submodule 2018-12-12 10:36:17 +01:00
Stéphane Adjemian (Hermes) 8f5ba227d1
Updated dseries submodule. 2018-12-11 19:38:29 +01:00
Stéphane Adjemian (Hermes) 89a8331eb6
Updated dseries submodule. 2018-12-10 23:00:52 +01:00
Sébastien Villemot efec664667
Preprocessor update + corresponding change in parameters derivatives
In the *_params_derivs.m files, in the "hp" matrix, the preprocessor now fully
outputs the symmetric elements, so getH needs to be adapted.

By the way, also clean up code for "rpp" and "gpp", were full symmetric
elements were also already present (and therefore do not need to be duplicated
in getH).
2018-11-22 17:53:39 +01:00
Sébastien Villemot 635aa65665 Merge branch 'ident_plot_bug' into 'master'
identification_analysis.m: Fix bug introduced in 60d95b65f2

See merge request Dynare/dynare!1637
2018-11-16 16:21:14 +00:00
Johannes Pfeifer b615d2d795 identification_analysis.m: Fix bug introduced in 60d95b65f2
We already used a variable called offset
2018-11-16 16:20:27 +01:00
Johannes Pfeifer 4ecbcbb136 evaluate_steady_state_file.m: Remove redundant setting of auxiliary variables
The original problems seems to have been fixed by #1133

Essentially reverts 3c7e60b744 and closes #1175
2018-11-16 14:12:55 +01:00
Johannes Pfeifer f947a31b80 evaluate_steady_state_file.m: fix two bugs in debugging mode 2018-11-16 09:24:43 +00:00
Johannes Pfeifer 60d95b65f2
Identification strength: make plotting consistent
1. Rely on actually computed standard deviations in bayestopt_ instead of potentially unset estim_params_
2. Remove arbitrary normalizations/omitted normalization in case of division by 0 in normalization
3. Distinguish between 0 identification and division by 0 due to normalization in plots

(cherry picked from commit 7341e21a381850c47fbed018bf6a7acdda4fa92e)
2018-11-16 10:17:30 +01:00
Sébastien Villemot ad451ad224 Merge branch 'prior_dens_info' into 'master'
Deal with info returned by priordens being a vector

See merge request Dynare/dynare!1629
2018-11-15 09:39:11 +00:00
Sébastien Villemot 513f3ec68e Merge branch 'evaluate_steady_state' into 'master'
evaluate_steady_state.m: consistently use params

Closes #1627

See merge request Dynare/dynare!1630
2018-11-15 09:22:09 +00:00
Johannes Pfeifer 30361ccb49 GSA scatter plots: Correctly pass LaTeX-names to figure 2018-11-14 18:37:54 +01:00
Johannes Pfeifer 022913579a map_calibration.m: Fix bug that prevented display of restrictions 2018-11-14 18:37:05 +01:00
Johannes Pfeifer c16c2fb894 evaluate_steady_state.m: consistently use params
Prevents erroneously relying on stale parameters from M.params (thanks to Tom Holden); closes #1627
2018-11-14 16:01:55 +01:00
Johannes Pfeifer 09a166f4e7 Revert "adding missing any()"
This reverts commit a5b97a28a0.
2018-11-14 15:04:27 +01:00
Johannes Pfeifer c1b0bb5ee3 initial_estimation_checks.m: Turn vector info into scalar
Related to a5b97a28a0 that needs to be reverted
2018-11-14 15:02:15 +01:00
Sébastien Villemot 18faa9733c
Further updates related to minimal MATLAB version bump 2018-11-13 18:29:20 +01:00
Sébastien Villemot 7a75872f72
Modernization: use tilde (~) syntax for ignored output arguments 2018-11-13 18:02:09 +01:00
Sébastien Villemot ce49cd95df
Add missing iscolumn and ismatrix for MATLAB < R2010b
Also fix a bug in isrow (it was not checking the rank of the array).
2018-11-13 16:59:27 +01:00
Sébastien Villemot 736d43c4e6
Bump minimal MATLAB version requirement to 7.9 (R2009b) 2018-11-13 15:59:16 +01:00
Sébastien Villemot 096936be9c
The preprocessor now compiles the MEX when use_dll is specified
Update documentation accordingly (except on macOS where the solution has not
yet been implemented).

Also include MinGW in the Windows installer.
2018-10-29 14:41:34 +01:00
Sébastien Villemot cc4183d3a5
Fix for recent MATLABs under Windows 2018-10-26 15:02:26 +02:00
Sébastien Villemot 8cb51e26e6
options_.instruments is now a cell array
This fixes crashes under Octave (while MATLAB seems to accept array-indexing
with cell arrays).
2018-10-25 15:01:53 +02:00
Stéphane Adjemia (Scylla) e5317b17de
Cosmetic change. 2018-10-06 17:52:58 +02:00
Stéphane Adjemia (Scylla) 108854a484
Bug fix. verbosity option was not honoured in simplex algorithm (8).
Thanks to Reuben for reporting.
2018-10-06 17:50:37 +02:00
Michel Juillard 3ad654b9b8
Allowing for different number of periods in conditional_forecast_path.
Updated preprocessor submodule.
2018-09-27 18:58:24 +02:00
Stéphane Adjemian(Charybdis) 07141a8681
Various optimizations. 2018-09-26 22:51:05 +02:00
Stéphane Adjemian(Charybdis) 7c83ba7ea7
Fixed documentation header. 2018-09-26 22:51:05 +02:00
Stéphane Adjemian(Charybdis) 2cf6ccdaa5 Updated dseries submodule. 2018-09-18 17:37:37 +02:00
Stéphane Adjemian(Charybdis) 3e6e448134 Updated dates and dseries submodules. 2018-09-14 23:13:13 +02:00
Stéphane Adjemian(Charybdis) 99aadf7d1a Updated m-unit-tests submodule. 2018-09-14 15:37:30 +02:00
Sébastien Villemot 51416bf2ae Always use "isoctave" for testing Octave context 2018-09-07 17:22:08 +02:00
Stéphane Adjemian(Charybdis) 86445832fd Added routine returning true iff a variable is an auxiliary variable. 2018-08-10 14:52:22 +02:00
Sébastien Villemot 13526bcbce Octave now has the same graphical waitbar as MATLAB (for MCMC progress) 2018-08-02 15:33:18 +02:00
Sébastien Villemot d03cc56587 solve_algo=7 and stack_solve_algo=2 are now allowed under Octave
The gmres() function has been implemented (actually since Octave 3.4.1!).
2018-08-02 15:20:39 +02:00
Sébastien Villemot fda021855c Fix forecast command with deterministic exogenous and linear option
Closes #1608
2018-08-02 14:20:51 +02:00
Stéphane Adjemian(Charybdis) 6d79ca4f58 Return 0 if input is empty. 2018-07-28 10:48:43 +02:00
Michel Juillard a5b97a28a0 adding missing any() 2018-07-27 20:24:13 +02:00
Johannes Pfeifer 433a68169d TaRB: fix bug where incorrect last posterior was returned if last draw was rejected 2018-07-24 17:07:29 +02:00
Stéphane Adjemian(Charybdis) 157641ac91 Updated particles submodule. 2018-07-24 14:12:53 +02:00
Stéphane Adjemian(Charybdis) cffff796f1 Added routine to test if an auxiliary variable is a lag of a variable. 2018-07-23 10:41:34 +02:00
Stéphane Adjemian(Charybdis) 7421e6b5b2 Fixed copyright header. 2018-07-19 15:36:02 +02:00
Stéphane Adjemian(Charybdis) 44c49eaef8 Improved iterations display of Dynare's simplex routine. 2018-07-19 15:15:05 +02:00
Stéphane Adjemian(Charybdis) 2d321cb0e3 Increased default number of iterations in simplex. 2018-07-19 15:15:05 +02:00
Johannes Pfeifer 97229177b4 simplex_optimization_routine.m: account for penalty indicator being third output, not fourth one
Caused occasional crashes
2018-07-19 09:25:27 +02:00
Stéphane Adjemian(Charybdis) 5361325ba9 Fixed unit test (false negative in Octave testsuite). 2018-07-18 12:18:43 +02:00
Stéphane Adjemian(Charybdis) ac3af2052a Remove test from Octave testsuite.
The function is only called by Matlab if the statistics toolbox is not available.
2018-07-18 11:14:47 +02:00
Stéphane Adjemian(Charybdis) 064b270795 Updated dseries submodule (Octave testsuite fixes). 2018-07-17 18:41:25 +02:00
Stéphane Adjemian(Charybdis) 8b0d673458 Cosmetic change (Octave unit test).
(cherry picked from commit 48ee13646a072d0ad9466f901f2d048594717d71)
2018-07-17 17:44:42 +02:00
Stéphane Adjemian(Charybdis) 0d27bd8dea Fixed unit tests on Weibull pdf (Octave testsuite).
(cherry picked from commit bc962a91c0749e6c9f108c867acde134e6bb80fc)
2018-07-17 17:44:15 +02:00
Stéphane Adjemian(Charybdis) 4154817acc Added missin semicolons.
(cherry picked from commit 4a0b1c2e93d23c85a7874b1bbea85819f56739f5)
2018-07-17 17:43:58 +02:00
Stéphane Adjemian(Charybdis) 9d01b17e03 Removed one unit test from Octave testsuite. 2018-07-17 11:30:20 +02:00
Stéphane Adjemian(Charybdis) 0074561182 Updated dseries submodule (unit test fix). 2018-07-14 11:54:01 +02:00
Sébastien Villemot 7685a0ccda Octave compatibility fix
Now that the set_auxiliary_variables file is in a "+" directory, Octave fails
at str2func if the file does not exist.
2018-07-13 17:22:27 +02:00
Stéphane Adjemian(Charybdis) 30c41733bc Updated dseries submodule. 2018-07-12 19:38:15 +02:00
Stéphane Adjemian(Charybdis) ebad639546 Bug fix (parenthesis mismatch). 2018-07-11 11:03:15 +02:00
Stéphane Adjemian(Charybdis) f0a5a2aac9 Adapted codes to the json files new location. 2018-07-10 20:17:43 +02:00
Sébastien Villemot 3863a74319 Fix bug introduced in 13ce91861 in graph decomposition under MATLAB 2018-07-04 12:33:51 +02:00
Sébastien Villemot 13ce918612 Octave compatibility fixes in graph decomposition 2018-07-02 16:06:11 +02:00
Sébastien Villemot b2c554623f Various fixes related to the new layout of generated files 2018-06-28 18:14:40 +02:00
Sébastien Villemot 87bb0c6997 Fix mistake in previous commit w.r.t. steadystate file 2018-06-27 17:15:13 +02:00
Sébastien Villemot a1b8bd39b2 Move the location of various generated files on the filesystem
- M and MEX files are now under +${MODELNAME}/
- bytecode, C source and JSON now under ${MODELNAME}/model/
2018-06-27 17:03:39 +02:00
Stéphane Adjemian(Charybdis) 93bb326cc2 Added routines for dealing with extraction of a single equation from JSON output. 2018-06-21 18:46:38 +02:00
Stéphane Adjemian(Charybdis) e3727db6a4 Updated particles submodule. 2018-06-14 11:50:55 +02:00
Stéphane Adjemian(Charybdis) eacb6eb498 Updated dseries submodule (bug fix). 2018-06-09 18:34:09 +02:00
Johannes Pfeifer 6607d3907a disp_identification.m: Account for jweak_pair generally being a matrix 2018-06-09 08:59:43 +02:00
Johannes Pfeifer b8094a2e84 Correct display of identification message if parameters are only collinear
Closes #1614
2018-06-07 19:29:24 +02:00
Sébastien Villemot 79484607a7 Fix various issues with stack_solve_algo=7 and lags on exogenous > 1
Complete the fix started in 8913791ff0.

Change the test case to prevent regressions.
2018-06-07 16:14:02 +02:00
Johannes Pfeifer 09ac7f6249 identification_analysis.m: make sure that increase in options_.ar is passed back via options_ident 2018-06-07 13:17:42 +02:00
Michel Juillard 8913791ff0 fixes bug for solve_algo = 10 and lags on exogenous variables 2018-06-07 12:21:58 +02:00
Sébastien Villemot a71e0ebee4 Add a compile-time check for MATLAB version, as we already do for Octave 2018-06-06 14:31:25 +02:00
Sébastien Villemot 88e89dfb21 Refactor test for Octave version
Distinguish between a minimal version required (from a source code perspective,
applicable on all platforms) and an exact version requirement (from a binary
package perspective, in practice used only for our Windows package).
2018-06-06 14:27:53 +02:00
Sébastien Villemot 57f6183d2f Move some functions out of missing/stats/, since they are only needed for MATLAB 2018-06-06 13:02:42 +02:00
Sébastien Villemot 9211d902a0 Update dseries 2018-06-05 19:56:42 +02:00
Sébastien Villemot 933ed45ead Octave 4.4 no longer includes statistics functions
Those have been moved to the statistics package. If that package is not there,
use a fallback.
2018-06-05 19:53:06 +02:00
Sébastien Villemot 7cbac0c989 Fix user_has_octave_forge_package
Packages are no longer autoloaded, so testing whether they are "Loaded" does
not work in all cases.

The function now ensures that the package is loaded.
2018-06-05 19:53:02 +02:00
Sébastien Villemot 0b2828af8a Fix typo 2018-06-05 17:27:22 +02:00
Sébastien Villemot e8ade6a187 Fix display of Dynare command arguments 2018-06-05 17:27:03 +02:00
Sébastien Villemot 8cadb2ac59 Silence Octave:classdef-to-struct warning 2018-06-05 17:24:52 +02:00
Sébastien Villemot c7a57e5906 corrcoef is included in Octave 4.4 2018-06-05 17:14:41 +02:00
Sébastien Villemot 7b546ba696 Compatibility fix for MATLAB < R2010b (7.11) 2018-05-30 17:44:46 +02:00
Stéphane Adjemian(Charybdis) 474556e0ca Added routines related to auxiliary variables. 2018-05-29 15:44:41 +02:00
Houtan Bastani d5862f93bf add comment explaining changes in 4e79d12e53 2018-05-28 14:32:11 +02:00
Houtan Bastani 4e79d12e53 move declaration of default values from global_initialization to a separate function 2018-05-28 14:07:32 +02:00
Houtan Bastani 97af53b82d fix mkdir call in global_initialization 2018-05-28 14:07:32 +02:00
Sébastien Villemot 02084ce310 Remove qzcomplex Oct-file
It's actually not needed. The QZ complex decomposition can be obtained in
Octave on real matrices by casting them to the complex type.
2018-05-17 12:11:15 +02:00
Stéphane Adjemian(Charybdis) ac5fcbe231 Use new approach for setting aux variables in model inversion routine.
(cherry picked from commit f1ed81aae2)
2018-05-16 17:27:51 +02:00
Sébastien Villemot 14fbfa028b Move qzdiv.m and qzswitch.m to partial_information/ subdir
They are no longer used in the main codebase.
2018-05-16 17:12:48 +02:00
Sébastien Villemot 59ad26a3c9 Improve fallback code when mjdgges DLL is absent
The new code relies on qz(..., 'real'), ordqz and ordeig, and returns a real
decomposition. The previous version was using Sims' qzdiv and returned a
complex decomposition.

As a consequence, we can drop options_.qzdiv, which was used to detect when
imaginary parts had to be dropped.

This code does not work on Octave for the time being, but this is acceptable
since it is only a fallback.
2018-05-16 17:12:48 +02:00
Sébastien Villemot c180777818 Move check about Octave version to the same place as check for MATLAB 2018-05-16 17:12:48 +02:00
Sébastien Villemot 42b82087d5 Remove codepaths for unsupported Octave versions 2018-05-16 17:12:48 +02:00
Stéphane Adjemian(Charybdis) afbac2e8eb Added strsplit routine in missing. 2018-05-16 16:41:43 +02:00
Stéphane Adjemian(Charybdis) f53be721c1 Added new option mh_tune_jscale.
Works only with the Random Walk Metropolis Hastings algorithm.

Closes #1598
2018-05-16 16:37:22 +02:00
Sébastien Villemot e2c2f2d966 Remove fallbacks for ilu, linsolve and ordschur under Octave
These functions are all included in Octave 4.2.
2018-05-16 10:48:44 +02:00
Sébastien Villemot 473b2f59ef Provisions for MATLAB 9.4 (R2018a)
Take into account the API break in the MEX interface (new interleaved complex API).
But do not split MEX directories on MacOS X for the time being.
2018-05-14 15:16:03 +02:00
Stéphane Adjemian(Charybdis) 3fe758c2b2 Cosmetic change in doc headers. 2018-05-05 21:58:52 +02:00
Stéphane Adjemian(Charybdis) 8f53be2a6f Impose the consistency of the count of unstable eigenvalues...
... Between stoch_simul and check. Added sdim (the number of stable
eigenvalues) and edim (the complementary number of explosive eigenvalues) in dr
structure. The test is always done with sdim (or edim) returned by mjdgges.
2018-05-05 19:53:13 +02:00
Stéphane Adjemian(Charybdis) fa15c3dbc7 Updated dates submodule. Closes #1601. 2018-05-05 14:56:56 +02:00
Stéphane Adjemian(Charybdis) fa67aeb7a6 Fixes issue #1607. 2018-05-05 10:29:37 +02:00
Stéphane Adjemian(Charybdis) 891e3ba7be Cosmetic change in doc headers. 2018-05-05 10:24:01 +02:00
Stéphane Adjemian(Charybdis) cee6dda44d Fixed check for octave version.
We should not issue a warning if version() is greater than supported_octave_version().
2018-03-24 22:48:45 +01:00
Stéphane Adjemian(Charybdis) aa4cabcbeb Fixed bug (simulation of backward models).
Was crashing with three inputs (last one is for innovations) when the first input was an empty array.
2018-03-12 09:45:15 +01:00
Stéphane Adjemian(Charybdis) 8263bbba8a Use new mechanism for setting auxiliary time series. 2018-03-12 09:34:56 +01:00
Stéphane Adjemian(Charybdis) 86be2cb998 Fixed typo. 2018-03-02 10:26:48 +01:00
Stéphane Adjemian(Charybdis) 857a3842e3 Cosmetic change.
Changed M_.max_*_orig into M_.orig_maximum_* for consistency with other fields.
2018-03-01 10:13:44 +01:00
Stéphane Adjemian(Charybdis) b84e3054e3 Various fixes for backward models routines. 2018-03-01 09:29:48 +01:00
Houtan Bastani 667bfb6948 dseries: submodule update 2018-02-20 11:03:12 +01:00
Stéphane Adjemian (Charybdis) fa598b751b Fixed prior command with optimize.
Penalty was not passed correctly.
2018-02-17 21:00:23 +01:00
Houtan Bastani d54cdbf0ac fix output when no arguments are passed to dynare 2018-02-16 17:31:53 +01:00
Houtan Bastani 5d439bcb18 submodule update: preprocessor and add dynare version to dynare.m 2018-02-16 17:31:47 +01:00
Stéphane Adjemian (Charybdis) 350b8fb529 Updated dseries submodule (prevent initialization crash if unable to install X13 binary). 2018-02-10 12:24:20 +01:00
Johannes Pfeifer 224ccb7bab sim1_linear.m: change hard-coded tolerance to option
The tolerance for the steady state check should depend on the accuracy of the steady state computation
2018-02-07 18:42:12 +01:00
Stéphane Adjemian (Charybdis) 4adebd4419 Fixed copyright header. 2018-02-01 22:51:23 +01:00
Marco Ratto cf5f556f4a Do not re-set auxiliary variables if they are already available in the input info [i.e. smoothed variables].
This makes the function robust when one provides info using UpdatedVariables, instead, for faster realtime exercises.
2018-02-01 19:17:59 +01:00
Marco Ratto a7bc6414f5 fixed bug to logical if condition 2018-02-01 19:14:13 +01:00
Johannes Pfeifer 127a543b65 prior bounds: make sure that lower and upper bounds only affect mode-finding
99dbc8c74d introduced a bug by disabling the resetting of the prior bounds used for the MCMC. The manual clearly states the bounds are only operational during mode-finding, but not during MCMC (and therefore prior sampling)
2018-02-01 10:16:47 +01:00
Stéphane Adjemian (Charybdis) fe7da22853 Fixed copyright header. 2018-02-01 10:05:03 +01:00
Johannes Pfeifer da48dea37c identification_analysis.m: remove transformation to char when cell is expected 2018-02-01 09:58:31 +01:00
Stéphane Adjemian (Charybdis) 410f8bd07c Cosmetic change and fixed copyright header. 2018-02-01 09:53:23 +01:00
Johannes Pfeifer 3679afe849 Discretion: Added catch for infinities
Comment: A user provided a file in which the Sylvester equation solved using doubling can evaluate to inf. When Doubling fails, one can try the Hessenberg-Schur algorithm.
2018-02-01 09:53:23 +01:00
Marco Ratto 13a30a0a4e add a new case for ratios between endogenous variables, like trade balance to GDP. 2018-01-27 10:37:31 +01:00
Marco Ratto b3bcd2c8b0 bug fixes: wrong name of field fig_name and properly using user defined fig_name 2018-01-27 10:37:31 +01:00
Marco Ratto 5e7256daeb Bug fixes after changes in the options structures for shock decompositions. 2018-01-27 10:37:31 +01:00
Johannes Pfeifer cbc0cdfef8 Fix bug in multivariate Kalman smoother when observations are missing
The singularity branch did not correctly account for the switching number of observables
2018-01-26 23:13:45 +01:00
Johannes Pfeifer 8e73289fe5 read_variables.m: consistently account for variables being stored as cell array 2018-01-26 12:29:03 +01:00
Stéphane Adjemian (Charybdis) 74fc7cc078 Copyright header fix. 2018-01-26 12:01:07 +01:00
Stéphane Adjemian (Charybdis) c4f1958690 Cosmetic changes + Copyright headers fixes. 2018-01-26 12:00:27 +01:00
Johannes Pfeifer b933a440bf Add debugging info to Kalman filter routines 2018-01-26 11:47:39 +01:00
Marco Ratto b9741548b0 As we do for the smoother, check the rank of Pinf only for the observables (i.e. using Z*Pinf*Z') 2018-01-26 11:47:39 +01:00
Marco Ratto cf8213f7a0 fix to the Kitigawa transformation that allows to reduce the computing time of the likelihood in large models, with a lot of static variables, by 30-50%.
This fixes the bug in e97e5c3407 that led to 2f9dc09285
It is tested and completely fixes the issue highlighted in #1312.
2018-01-26 11:47:39 +01:00
Johannes Pfeifer 60efdd49bb disp_steady_state.m: Use character array to make sure alignment in display of steady state is right 2018-01-26 11:45:54 +01:00
Johannes Pfeifer a418a04249 model_diagnostics.m: bugfix after transition to cell arrays
disp does not work with cell
2018-01-26 11:45:54 +01:00
Johannes Pfeifer 9fadf19bc2 Add -accepteula flag to psexec call
Prevents freezing if dialog has not been opened before
2018-01-25 11:45:41 +01:00
Johannes Pfeifer ec3fb76aa7 posterior_sampler: Fix naming error that crashes parallel estimation 2018-01-25 11:45:41 +01:00
Stéphane Adjemian (Charybdis) 2647f258d4 Cosmetic changes (code factorization). 2018-01-25 11:34:54 +01:00
Johannes Pfeifer 4c7960fbdc AnalyseComputationalEnvironment.m: print out command that caused error as well as system response 2018-01-25 10:49:58 +01:00
Johannes Pfeifer ef797eec0f mode_check.m: account for case where bounds are infinite and not plots are shown 2018-01-24 23:21:10 +01:00
Stéphane Adjemian (Charybdis) c7a860e6b6 Fixed bug in interactive choice of the endogenous variables.
Bug introduced when we replaced the character arrays by cell of row character
arrays. Closes #1577.
2018-01-24 18:22:45 +01:00
Johannes Pfeifer 28b499af3b Filter out cases where stochastic_solvers.m is called at higher order without k_order_solver 2018-01-24 17:50:42 +01:00
Stéphane Adjemian (Charybdis) ad0bff3771 Added comments. 2018-01-24 17:24:21 +01:00
Johannes Pfeifer 99e4cb6e7e evaluate_steady_state_file.m: Condition call to str2func on function being present
Workaround for Octave bug https://savannah.gnu.org/bugs/?52568
2018-01-24 17:21:16 +01:00
Stéphane Adjemian (Charybdis) 76d05aea57 Merge branch 'pr#1583' 2018-01-24 16:38:37 +01:00
Stéphane Adjemian (Charybdis) e6cc7d6a7f Rewrote header. 2018-01-24 15:59:47 +01:00
Stéphane Adjemian (Charybdis) 145f1e7b1c Streamlined code by removing unnecessary conditions. 2018-01-24 15:59:04 +01:00
Johannes Pfeifer 92549e48b1 Make demean.m use nanmean
Otherwise estimation with missing observations and prefilter option will crash
2018-01-20 08:26:00 +01:00
Stéphane Adjemian(Charybdis) 055ffb0b9e Added second input argument to missing/nanmean routine.
This additional argument is optional and can be used to specify along which
dimension the mean has to be computed.

Fixes the bug introduced in b4204f8b9e for those
who do not have the statistics toolbox.
2018-01-13 00:10:50 +01:00
Marco Ratto ec35210e06 - bug fix for when NO parameter is detected below pvalue threshold
- fix to the case when no plot is done when there are too few behavioral/non-behavioral runs [as it already happens when one of the two sets is empty]
- added more explicit messages on screen
2018-01-12 10:04:57 +01:00
Johannes Pfeifer b4204f8b9e Make sure that mean and covariance of data are correctly computed with only one observation
Need to always compute mean along first dimension

(cherry picked from commit 2d371b1997f5fa07fcbbf47e5923d7817d07c6b9)
2018-01-12 09:48:14 +01:00