56edaf5cb0
Fix check for existence of dname variable
2017-03-07 13:55:29 +01:00
927b813ed8
Removed printing of debugging info.
...
Introduced in ffebf6b262
2017-02-15 13:35:33 +01:00
ffebf6b262
Check positive steady state for loglinear option...
...
1e-9 is too far from zero. Set 1e-16 as a threshold value for the positivity test.
2017-02-15 12:41:56 +01:00
9fbef0c107
Removed penalty_hessian routine.
...
+ Code factorization.
+ Added an option for using the penalized objective when computing numerically
the hessian at the mode.
Previous behaviour (introduced with penalty_hessian routine) was to compute the
hessian matrix at the mode with the penalized objective function (instead of
the original objective function). This behaviour hides problematic situations,
where the computed hessian (using the original objective) would not be full
rank. For instance, if the estimation ends up with a parameter on (or very
close to) the bounds of its possible values (which is often not a desirable
outcome), the estimated posterior variance would be zero for this
parameter (with the original objective) because the hessian is not finite in
this direction, while the posterior variance would be positive if the penalized
objective is used instead. But this estimate would not be reliable by
construction of the penalty which is quite ad-hoc (more fundamentally I do not
think that there exists any rational for approximating the covariance matrix
with the inverse of the hessian matrix if the mode is on the border of the set
of possible values).
This commit restore the behaviour previous to 2446ab02ba
2017-02-08 13:07:25 +00:00
5b73d7d59c
Added new optimization routine (particleswarm).
...
Only available under Matlab if the Global Optimization Toolbox is installed.
2017-02-08 13:07:25 +00:00
35078e13ee
Completed header + cosmetic changes.
2017-02-08 13:07:25 +00:00
8d4abe4a9f
Cosmetic changes.
2017-02-08 13:07:24 +00:00
e71e89bb38
Added check on Octave version.
2017-02-08 13:07:24 +00:00
62c954ff12
Fixes #1287 .
2017-01-25 22:13:36 +01:00
0b1b873160
Updated dseries submodule.
...
Fixes remaining Octave failing unit tests.
2017-01-25 09:18:28 +01:00
875497bc71
Unit test lpdfgweibull.m: adjust upper integration bound under Octave
...
Does not correctly integrate otherwise as more than 99% of support is 0
2017-01-18 11:01:13 +01:00
ce4ab7f7d8
Unit test wblinv.m under Octave: adjust tolerance
2017-01-18 10:59:53 +01:00
12b8a915e9
submodule update: reporting
2017-01-09 16:20:15 +01:00
ba9af24a67
Merge pull request #1370 from JohannesPfeifer/updated_variables
...
Output UpdatedVariables in oo_ without filtered_variables
2017-01-05 11:50:06 +01:00
4dfec0d7fb
Merge pull request #1369 from JohannesPfeifer/disp_dr_aux_var
...
disp_dr: Add case for aux_vars.type==0
2017-01-05 10:44:44 +01:00
77a93d6ff9
Merge pull request #1362 from JohannesPfeifer/MCMC_jumping_covariance
...
Moving loading of MCMC_jumping_covariance to after display of standar…
2017-01-05 09:02:59 +01:00
b464226eaa
Merge pull request #1358 from JohannesPfeifer/nograph
...
Implement posterior_nograph option
2017-01-05 06:52:08 +01:00
90982d5fa0
Merge pull request #1357 from rattoma/parallel
...
Provisions for new node option NumberOfThreadsPerJob. Document option
2017-01-04 23:29:24 +01:00
c893c0620c
Merge branch 'pr#1354'
2017-01-04 15:12:32 +01:00
2c5b1fed2d
Use master function lyapunov_solver.m to call individual solvers
2017-01-04 11:25:44 +01:00
b946d3c082
Merge pull request #1353 from JohannesPfeifer/Plot_posterior
...
PlotPosteriorDistributions.m: remove eval commands and fix typo in "m…
2017-01-04 11:20:06 +01:00
e815c2b4db
Output UpdatedVariables in oo_ without filtered_variables
...
Makes it consistent with manual and closes #1366
2017-01-04 10:57:00 +01:00
515e080f49
Do not compute static residuals if steady state routine failed.
...
Avoids cryptic model dependent error message.
2017-01-04 10:26:22 +01:00
65c402469c
disp_dr: Add case for aux_vars.type==0
...
Closes #1367
2017-01-04 09:14:01 +01:00
3c892170ef
Fixed bug with getting CPU number on mac [see #1272 #838 ]
2017-01-03 19:24:18 +01:00
ee7611c8ad
added note to commented text, as an alternate option, should bugs/problems be reported with line 60
2017-01-03 19:15:53 +01:00
7b4fc9ec4a
Moving loading of MCMC_jumping_covariance to after display of standard errors and computation of Laplace approximation
...
Closes #1255
2016-12-27 12:07:22 +01:00
d8b0495c77
Make PosteriorIRF.m and pm3.m honor nograph and posterior_nograph option
2016-12-26 13:11:01 +01:00
452d3cd986
Implement preprocessor interface for posterior_nograph option
2016-12-26 13:07:46 +01:00
28d4ed1918
Finish implementation and documentation of nograph option of shock_decomposition.m
2016-12-26 12:52:28 +01:00
4ecf1d9f5d
Workaround to avoid popup figures with nodisplay option saved as fig in MATLAB.
2016-12-20 09:14:48 +01:00
a55cbdd5fe
Provisions for new node option NumberOfThreadsPerJob. Document option
2016-12-19 23:28:46 +01:00
352786c2b4
load_mh_file: recompute results by default and load on request
...
Prevents general overwriting of results in oo_ and having stale results
2016-12-19 19:37:34 +01:00
5707b4d965
Make evaluate_smoother.m output former global variables for correct updating of these objects
2016-12-18 12:43:29 +01:00
61ee4e123c
Reset selected_variables_only in shock_decomposition.m
...
closes #1350
2016-12-18 09:57:51 +01:00
2f717b5adc
Eliminate global variables from shock_decomposition.m
2016-12-18 09:57:51 +01:00
33d0f44c40
model_diagnostics.m: provide warning that check of dynamic model is not supported for block option instead of crashing
2016-12-17 21:28:04 +01:00
1a8382adfb
OSR: add error indicator and suppress output if noprint options is specified
2016-12-17 19:30:57 +01:00
7254767ccf
Fix bug in osr_obj.m that did not correctly filter out all problems
2016-12-17 19:30:57 +01:00
481bb43fd7
PlotPosteriorDistributions.m: remove eval commands and fix typo in "mearsurement_errors"
2016-12-17 18:20:58 +01:00
5515da191a
Add Raftery/Lewis (1992) convergence diagnostics
2016-12-17 17:22:05 +01:00
c03fa143f7
Fix printout of comment in McMCDiagnostics.m
2016-12-17 17:22:05 +01:00
d6d517c4c9
Move MCMC diagnostics files to separated folder
2016-12-17 17:22:04 +01:00
6fd715a3b8
adding simul_backward and simul_backward_linear
2016-12-05 16:17:14 +01:00
c2d72d2292
fix check of path for octave
2016-12-05 12:28:02 +01:00
f5fb81a758
Correct typos in error message and header
2016-12-01 17:49:06 +01:00
95076d5c72
Fixed initial condition of stochastic simulation of backward looking models.
...
Do not initialize with the steady state. Use histval if available,
default initialization is 0 (which may be problematic).
2016-12-01 13:32:54 +01:00
ca1c6ecc0e
Increase test tolerance under Octave for lpdfgweibull.m
2016-11-24 11:50:21 +01:00
42acb96b3d
renamed compute schur_statespace_transformation.m
...
refactored code
2016-11-22 18:40:10 +01:00
73e0f9d591
made evaluate_steady_state file consistent with evaluation of auxiliary
...
variables in <fname>_static.m file
2016-11-20 15:40:08 +01:00
Johannes Pfeifer
Stéphane Adjemian (Charybdis)
Houtan Bastani
Marco Ratto
Michel Juillard
Michel Juillard