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Merge branch 'remove_files' into 'master' 

Remove various unused files

See merge request Dynare/dynare!2217
new-samplers
Sébastien Villemot 2023-12-11 20:38:06 +00:00
parent d844043877 31c91080e1
commit b7805cc667
9 changed files with 0 additions and 804 deletions
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152
matlab/AHessian.m
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@ -1,152 +0,0 @@
function [AHess, DLIK, LIK] = AHessian(T,R,Q,H,P,Y,DT,DYss,DOm,DH,DP,start,mf,kalman_tol,riccati_tol)
% function [AHess, DLIK, LIK] = AHessian(T,R,Q,H,P,Y,DT,DYss,DOm,DH,DP,start,mf,kalman_tol,riccati_tol)
%
% computes the asymptotic hessian matrix of the log-likelihood function of
% a state space model (notation as in kalman_filter.m in DYNARE
% Thanks to Nikolai Iskrev
%
% NOTE: the derivative matrices (DT,DR ...) are 3-dim. arrays with last
% dimension equal to the number of structural parameters
% Copyright © 2011-2017 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare. If not, see <https://www.gnu.org/licenses/>.
k = size(DT,3); % number of structural parameters
smpl = size(Y,2); % Sample size.
pp = size(Y,1); % Maximum number of observed variables.
mm = size(T,2); % Number of state variables.
a = zeros(mm,1); % State vector.
Om = R*Q*transpose(R); % Variance of R times the vector of structural innovations.
t = 0; % Initialization of the time index.
oldK = 0;
notsteady = 1; % Steady state flag.
F_singular = 1;
lik = zeros(smpl,1); % Initialization of the vector gathering the densities.
LIK = Inf; % Default value of the log likelihood.
if nargout > 1
DLIK = zeros(k,1); % Initialization of the score.
end
AHess = zeros(k,k); % Initialization of the Hessian
Da = zeros(mm,k); % State vector.
Dv = zeros(length(mf),k);
% for ii = 1:k
% DOm = DR(:,:,ii)*Q*transpose(R) + R*DQ(:,:,ii)*transpose(R) + R*Q*transpose(DR(:,:,ii));
% end
while notsteady && t<smpl
t = t+1;
v = Y(:,t)-a(mf);
F = P(mf,mf) + H;
if rcond(F) < kalman_tol
if ~all(abs(F(:))<kalman_tol)
return
else
a = T*a;
P = T*P*transpose(T)+Om;
end
else
F_singular = 0;
iF = inv(F);
K = P(:,mf)*iF;
lik(t) = log(det(F))+transpose(v)*iF*v;
[DK,DF,DP1] = computeDKalman(T,DT,DOm,P,DP,DH,mf,iF,K);
for ii = 1:k
Dv(:,ii) = -Da(mf,ii) - DYss(mf,ii);
Da(:,ii) = DT(:,:,ii)*(a+K*v) + T*(Da(:,ii)+DK(:,:,ii)*v + K*Dv(:,ii));
if t>=start && nargout > 1
DLIK(ii,1) = DLIK(ii,1) + trace( iF*DF(:,:,ii) ) + 2*Dv(:,ii)'*iF*v - v'*(iF*DF(:,:,ii)*iF)*v;
end
end
vecDPmf = reshape(DP(mf,mf,:),[],k);
% iPmf = inv(P(mf,mf));
if t>=start
AHess = AHess + Dv'*iF*Dv + .5*(vecDPmf' * kron(iF,iF) * vecDPmf);
end
a = T*(a+K*v);
P = T*(P-K*P(mf,:))*transpose(T)+Om;
DP = DP1;
end
notsteady = max(max(abs(K-oldK))) > riccati_tol;
oldK = K;
end
if F_singular
error('The variance of the forecast error remains singular until the end of the sample')
end
if t < smpl
t0 = t+1;
while t < smpl
t = t+1;
v = Y(:,t)-a(mf);
for ii = 1:k
Dv(:,ii) = -Da(mf,ii)-DYss(mf,ii);
Da(:,ii) = DT(:,:,ii)*(a+K*v) + T*(Da(:,ii)+DK(:,:,ii)*v + K*Dv(:,ii));
if t>=start && nargout >1
DLIK(ii,1) = DLIK(ii,1) + trace( iF*DF(:,:,ii) ) + 2*Dv(:,ii)'*iF*v - v'*(iF*DF(:,:,ii)*iF)*v;
end
end
if t>=start
AHess = AHess + Dv'*iF*Dv;
end
a = T*(a+K*v);
lik(t) = transpose(v)*iF*v;
end
AHess = AHess + .5*(smpl-t0+1)*(vecDPmf' * kron(iF,iF) * vecDPmf);
if nargout > 1
for ii = 1:k
% DLIK(ii,1) = DLIK(ii,1) + (smpl-t0+1)*trace( iF*DF(:,:,ii) );
end
end
lik(t0:smpl) = lik(t0:smpl) + log(det(F));
% for ii = 1:k;
% for jj = 1:ii
% H(ii,jj) = trace(iPmf*(.5*DP(mf,mf,ii)*iPmf*DP(mf,mf,jj) + Dv(:,ii)*Dv(:,jj)'));
% end
% end
end
AHess = -AHess;
if nargout > 1
DLIK = DLIK/2;
end
% adding log-likelihhod constants
lik = (lik + pp*log(2*pi))/2;
LIK = sum(lik(start:end)); % Minus the log-likelihood.
% end of main function
function [DK,DF,DP1] = computeDKalman(T,DT,DOm,P,DP,DH,mf,iF,K)
k = size(DT,3);
tmp = P-K*P(mf,:);
for ii = 1:k
DF(:,:,ii) = DP(mf,mf,ii) + DH(:,:,ii);
DiF(:,:,ii) = -iF*DF(:,:,ii)*iF;
DK(:,:,ii) = DP(:,mf,ii)*iF + P(:,mf)*DiF(:,:,ii);
Dtmp = DP(:,:,ii) - DK(:,:,ii)*P(mf,:) - K*DP(mf,:,ii);
DP1(:,:,ii) = DT(:,:,ii)*tmp*T' + T*Dtmp*T' + T*tmp*DT(:,:,ii)' + DOm(:,:,ii);
end
% end of computeDKalman

47
matlab/bseastr.m
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@ -1,47 +0,0 @@
function x = bseastr(s1,s2)
% Copyright © 2001-2017 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare. If not, see <https://www.gnu.org/licenses/>.
m = size(s1,1) ;
x = zeros(m,1) ;
s1=upper(deblank(s1));
s2=upper(deblank(s2));
for im = 1:m
key = s1(im,:) ;
h = size(s2,1) ;
l = 1 ;
while l <= h
mid = round((h+l)/2) ;
temp = s2(mid,:) ;
if ~ strcmp(key,temp)
for i = 1:min(length(key),length(temp))
if temp(i) > key(i)
h = mid - 1 ;
break
else
l = mid + 1 ;
break
end
end
else
x(im) = mid ;
break
end
end
end

84
matlab/ftest.m
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function ftest (s1,s2)
% Copyright © 2001-2017 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare. If not, see <https://www.gnu.org/licenses/>.
global nvx nvy x y lag1
if size(s1,1) ~= 2
error ('Spécifiez deux fichiers pour la comparaison.') ;
end
for i = 1:2
if ~ isempty(find(abs(s1(i,:)) == 46))
error ('Entrez les noms de fichiers sans extensions.') ;
end
end
s1 = [s1 [' ';' ']] ;
file1 = [s1(1,1:min(find(abs(s1(1,:)) == 32))-1) '.BIN'] ;
file2 = [s1(2,1:min(find(abs(s1(2,:)) == 32))-1) '.BIN'] ;
fid=fopen(file1,'r') ;
n1 = fread(fid,1,'int') ;
n2 = fread(fid,1,'int') ;
n3 = fread(fid,1,'int') ;
lag1 = fread(fid,4,'int') ;
nvx = fread(fid,[n1,n3],'int') ;
x = fread(fid,[n1,n2],'float64') ;
fclose(fid) ;
nvx = char(nvx) ;
fid=fopen(file2,'r') ;
n1 = fread(fid,1,'int') ;
n2 = fread(fid,1,'int') ;
n3 = fread(fid,1,'int') ;
lag2 = fread(fid,4,'int') ;
nvy = fread(fid,[n1,n3],'int') ;
y = fread(fid,[n1,n2],'float64') ;
fclose(fid) ;
nvy = char(nvy) ;
if size(x,1) ~= size(y,1)
error ('FTEST: The two files don''t have the same number of variables.');
end
for i = 1:size(x,1)
if ~ strcmp(nvx(i,:),nvy(i,:))
error ('FTEST: The two files don''t have the same variables.') ;
end
end
if nnz(lag1 - lag2) > 0
error ('FTEST: Leads and lags aren''t the same in both files.') ;
end
j = zeros(size(s2,1),1);
for i=1:size(s2,1)
k = strmatch(s2(i,:),nvx,'exact') ;
if isempty(k)
t = ['FTEST: Variable ' s2(i) 'doesn''t exist'] ;
error (t) ;
else
j(i) =k;
end
end
y = y(j,:) ;
x = x(j,:) ;
%06/18/01 MJ replaced beastr by strmatch

52
matlab/gcompare.m
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function gcompare(s1,s2)
% GCOMPARE : GCOMPARE ( [ 'file1' ; 'file2' ] , [ 'var1' ; 'var2' ...] )
% This optional command plots the trajectories of a list of
% variables in two different simulations. One plot is drawn
% for each variable. The trajectories must have been previously
% saved by the instruction DYNASAVE. The simulation in file1
% is refered to as the base simulation.
% Copyright © 2001-2017 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare. If not, see <https://www.gnu.org/licenses/>.
global options_ M_
global nvx nvy x y lag1
ftest(s1,s2) ;
ix = [1-lag1(1):size(x,2)-lag1(1)]' ;
i = [lag1(1):size(ix,1)-lag1(2)+1]' ;
if options_.smpl == 0
i = [M_.maximum_lag:size(y,2)]' ;
else
i = [options_.smpl(1):options_.smpl(2)]' ;
end
for k = 1:size(x,1)
figure ;
plot (ix(i),x(k,i),ix(i),y(k,i)) ;
xlabel (['Periods']) ;
title (['Variable ' s2(k,:)]) ;
l = min(i) + 1;
ll = max(i) - 1 ;
text (l,x(k,l),s1(1,:)) ;
text (ll,y(k,ll),s1(2,:)) ;
end
% 06/18/01 MJ corrected treatment of options_.smpl
% 06/24/01 MJ removed color specification

255
matlab/get_Hessian.m
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@ -1,255 +0,0 @@
function [Hess] = get_Hessian(T,R,Q,H,P,Y,DT,DYss,DOm,DH,DP,D2T,D2Yss,D2Om,D2H,D2P,start,mf,kalman_tol,riccati_tol)
% function [Hess] = get_Hessian(T,R,Q,H,P,Y,DT,DYss,DOm,DH,DP,D2T,D2Yss,D2Om,D2H,D2P,start,mf,kalman_tol,riccati_tol)
%
% computes the hessian matrix of the log-likelihood function of
% a state space model (notation as in kalman_filter.m in DYNARE
% Thanks to Nikolai Iskrev
%
% NOTE: the derivative matrices (DT,DR ...) are 3-dim. arrays with last
% dimension equal to the number of structural parameters
% NOTE: the derivative matrices (D2T,D2Om ...) are 4-dim. arrays with last
% two dimensions equal to the number of structural parameters
% Copyright © 2011-2017 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare. If not, see <https://www.gnu.org/licenses/>.
k = size(DT,3); % number of structural parameters
smpl = size(Y,2); % Sample size.
pp = size(Y,1); % Maximum number of observed variables.
mm = size(T,2); % Number of state variables.
a = zeros(mm,1); % State vector.
Om = R*Q*transpose(R); % Variance of R times the vector of structural innovations.
t = 0; % Initialization of the time index.
oldK = 0;
notsteady = 1; % Steady state flag.
F_singular = 1;
Hess = zeros(k,k); % Initialization of the Hessian
Da = zeros(mm,k); % State vector.
Dv = zeros(length(mf),k);
D2a = zeros(mm,k,k); % State vector.
D2v = zeros(length(mf),k,k);
C = zeros(length(mf),mm);
for ii=1:length(mf); C(ii,mf(ii))=1;end % SELECTION MATRIX IN MEASUREMENT EQ. (FOR WHEN IT IS NOT CONSTANT)
dC = zeros(length(mf),mm,k);
d2C = zeros(length(mf),mm,k,k);
s = zeros(pp,1); % CONSTANT TERM IN MEASUREMENT EQ. (FOR WHEN IT IS NOT CONSTANT)
ds = zeros(pp,1,k);
d2s = zeros(pp,1,k,k);
% for ii = 1:k
% DOm = DR(:,:,ii)*Q*transpose(R) + R*DQ(:,:,ii)*transpose(R) + R*Q*transpose(DR(:,:,ii));
% end
while notsteady & t<smpl
t = t+1;
v = Y(:,t)-a(mf);
F = P(mf,mf) + H;
if rcond(F) < kalman_tol
if ~all(abs(F(:))<kalman_tol)
return
else
a = T*a;
P = T*P*transpose(T)+Om;
end
else
F_singular = 0;
iF = inv(F);
K = P(:,mf)*iF;
[DK,DF,DP1] = computeDKalman(T,DT,DOm,P,DP,DH,mf,iF,K);
[D2K,D2F,D2P1] = computeD2Kalman(T,DT,D2T,D2Om,P,DP,D2P,DH,mf,iF,K,DK);
tmp = (a+K*v);
for ii = 1:k
Dv(:,ii) = -Da(mf,ii) - DYss(mf,ii);
% dai = da(:,:,ii);
dKi = DK(:,:,ii);
diFi = -iF*DF(:,:,ii)*iF;
dtmpi = Da(:,ii)+dKi*v+K*Dv(:,ii);
for jj = 1:ii
dFj = DF(:,:,jj);
diFj = -iF*DF(:,:,jj)*iF;
dKj = DK(:,:,jj);
d2Kij = D2K(:,:,jj,ii);
d2Fij = D2F(:,:,jj,ii);
d2iFij = -diFi*dFj*iF -iF*d2Fij*iF -iF*dFj*diFi;
dtmpj = Da(:,jj)+dKj*v+K*Dv(:,jj);
d2vij = -D2Yss(mf,jj,ii) - D2a(mf,jj,ii);
d2tmpij = D2a(:,jj,ii) + d2Kij*v + dKj*Dv(:,ii) + dKi*Dv(:,jj) + K*d2vij;
D2a(:,jj,ii) = D2T(:,:,jj,ii)*tmp + DT(:,:,jj)*dtmpi + DT(:,:,ii)*dtmpj + T*d2tmpij;
Hesst(ii,jj) = getHesst_ij(v,Dv(:,ii),Dv(:,jj),d2vij,iF,diFi,diFj,d2iFij,dFj,d2Fij);
end
Da(:,ii) = DT(:,:,ii)*tmp + T*dtmpi;
end
% vecDPmf = reshape(DP(mf,mf,:),[],k);
% iPmf = inv(P(mf,mf));
if t>=start
Hess = Hess + Hesst;
end
a = T*(a+K*v);
P = T*(P-K*P(mf,:))*transpose(T)+Om;
DP = DP1;
D2P = D2P1;
end
notsteady = max(max(abs(K-oldK))) > riccati_tol;
oldK = K;
end
if F_singular
error('The variance of the forecast error remains singular until the end of the sample')
end
if t < smpl
t0 = t+1;
while t < smpl
t = t+1;
v = Y(:,t)-a(mf);
tmp = (a+K*v);
for ii = 1:k
Dv(:,ii) = -Da(mf,ii)-DYss(mf,ii);
dKi = DK(:,:,ii);
diFi = -iF*DF(:,:,ii)*iF;
dtmpi = Da(:,ii)+dKi*v+K*Dv(:,ii);
for jj = 1:ii
dFj = DF(:,:,jj);
diFj = -iF*DF(:,:,jj)*iF;
dKj = DK(:,:,jj);
d2Kij = D2K(:,:,jj,ii);
d2Fij = D2F(:,:,jj,ii);
d2iFij = -diFi*dFj*iF -iF*d2Fij*iF -iF*dFj*diFi;
dtmpj = Da(:,jj)+dKj*v+K*Dv(:,jj);
d2vij = -D2Yss(mf,jj,ii) - D2a(mf,jj,ii);
d2tmpij = D2a(:,jj,ii) + d2Kij*v + dKj*Dv(:,ii) + dKi*Dv(:,jj) + K*d2vij;
D2a(:,jj,ii) = D2T(:,:,jj,ii)*tmp + DT(:,:,jj)*dtmpi + DT(:,:,ii)*dtmpj + T*d2tmpij;
Hesst(ii,jj) = getHesst_ij(v,Dv(:,ii),Dv(:,jj),d2vij,iF,diFi,diFj,d2iFij,dFj,d2Fij);
end
Da(:,ii) = DT(:,:,ii)*tmp + T*dtmpi;
end
if t>=start
Hess = Hess + Hesst;
end
a = T*(a+K*v);
end
% Hess = Hess + .5*(smpl+t0-1)*(vecDPmf' * kron(iPmf,iPmf) * vecDPmf);
% for ii = 1:k;
% for jj = 1:ii
% H(ii,jj) = trace(iPmf*(.5*DP(mf,mf,ii)*iPmf*DP(mf,mf,jj) + Dv(:,ii)*Dv(:,jj)'));
% end
% end
end
Hess = Hess + tril(Hess,-1)';
Hess = -Hess/2;
% end of main function
function Hesst_ij = getHesst_ij(e,dei,dej,d2eij,iS,diSi,diSj,d2iSij,dSj,d2Sij);
% computes (i,j) term in the Hessian
Hesst_ij = trace(diSi*dSj + iS*d2Sij) + e'*d2iSij*e + 2*(dei'*diSj*e + dei'*iS*dej + e'*diSi*dej + e'*iS*d2eij);
% end of getHesst_ij
function [DK,DF,DP1] = computeDKalman(T,DT,DOm,P,DP,DH,mf,iF,K)
k = size(DT,3);
tmp = P-K*P(mf,:);
for ii = 1:k
DF(:,:,ii) = DP(mf,mf,ii) + DH(:,:,ii);
DiF(:,:,ii) = -iF*DF(:,:,ii)*iF;
DK(:,:,ii) = DP(:,mf,ii)*iF + P(:,mf)*DiF(:,:,ii);
Dtmp = DP(:,:,ii) - DK(:,:,ii)*P(mf,:) - K*DP(mf,:,ii);
DP1(:,:,ii) = DT(:,:,ii)*tmp*T' + T*Dtmp*T' + T*tmp*DT(:,:,ii)' + DOm(:,:,ii);
end
% end of computeDKalman
function [d2K,d2S,d2P1] = computeD2Kalman(A,dA,d2A,d2Om,P0,dP0,d2P0,DH,mf,iF,K0,dK0)
% computes the second derivatives of the Kalman matrices
% note: A=T in main func.
k = size(dA,3);
tmp = P0-K0*P0(mf,:);
[ns,no] = size(K0);
% CPC = C*P0*C'; CPC = .5*(CPC+CPC');iF = inv(CPC);
% APC = A*P0*C';
% APA = A*P0*A';
d2K = zeros(ns,no,k,k);
d2S = zeros(no,no,k,k);
d2P1 = zeros(ns,ns,k,k);
for ii = 1:k
dAi = dA(:,:,ii);
dFi = dP0(mf,mf,ii);
d2Omi = d2Om(:,:,ii);
diFi = -iF*dFi*iF;
dKi = dK0(:,:,ii);
for jj = 1:k
dAj = dA(:,:,jj);
dFj = dP0(mf,mf,jj);
d2Omj = d2Om(:,:,jj);
dFj = dP0(mf,mf,jj);
diFj = -iF*dFj*iF;
dKj = dK0(:,:,jj);
d2Aij = d2A(:,:,jj,ii);
d2Pij = d2P0(:,:,jj,ii);
d2Omij = d2Om(:,:,jj,ii);
% second order
d2Fij = d2Pij(mf,mf) ;
% d2APC = d2Aij*P0*C' + A*d2Pij*C' + A*P0*d2Cij' + dAi*dPj*C' + dAj*dPi*C' + A*dPj*dCi' + A*dPi*dCj' + dAi*P0*dCj' + dAj*P0*dCi';
d2APC = d2Pij(:,mf);
d2iF = -diFi*dFj*iF -iF*d2Fij*iF -iF*dFj*diFi;
d2Kij= d2Pij(:,mf)*iF + P0(:,mf)*d2iF + dP0(:,mf,jj)*diFi + dP0(:,mf,ii)*diFj;
d2KCP = d2Kij*P0(mf,:) + K0*d2Pij(mf,:) + dKi*dP0(mf,:,jj) + dKj*dP0(mf,:,ii) ;
dtmpi = dP0(:,:,ii) - dK0(:,:,ii)*P0(mf,:) - K0*dP0(mf,:,ii);
dtmpj = dP0(:,:,jj) - dK0(:,:,jj)*P0(mf,:) - K0*dP0(mf,:,jj);
d2tmp = d2Pij - d2KCP;
d2AtmpA = d2Aij*tmp*A' + A*d2tmp*A' + A*tmp*d2Aij' + dAi*dtmpj*A' + dAj*dtmpi*A' + A*dtmpj*dAi' + A*dtmpi*dAj' + dAi*tmp*dAj' + dAj*tmp*dAi';
d2K(:,:,ii,jj) = d2Kij; %#ok<NASGU>
d2P1(:,:,ii,jj) = d2AtmpA + d2Omij; %#ok<*NASGU>
d2S(:,:,ii,jj) = d2Fij;
% d2iS(:,:,ii,jj) = d2iF;
end
end
% end of computeD2Kalman

8
matlab/mcpath_function.m
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@ -1,8 +0,0 @@
function [res,jac,domerr] = mcpath_function(func,z,jacflag,varargin)
domerr = 0;
if jacflag
[res,jac] = func(z,varargin{:});
else
res = func(z,varargin{:});
end

55
matlab/metropolis_run_analysis.m
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@ -1,55 +0,0 @@
function metropolis_run_analysis(M_,basetopt,j)
%function metropolis_run_analysis(M_,basetopt,j
% analizes Metropolis runs
%
% INPUTS
% M_: (struct) Model structure
% basetopt: (struct) Estimated parameters structure
% j: (int) Index of estimated paramter
%
% OUTPUTS
% none
%
% SPECIAL REQUIREMENTS
% none
% Copyright © 2003-2017 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare. If not, see <https://www.gnu.org/licenses/>.
load([M_.fname '/metropolis/' M_.fname '_mh_history'])
nblck = record.Nblck;
ndraws = sum(record.MhDraws(:,1));
logPost = [];
params = [];
blck = 1;
for i=1:record.LastFileNumber
fname = [M_.fname '/metropolis/' M_.fname '_mh' int2str(i) '_blck' ...
int2str(blck) '.mat'];
if exist(fname,'file')
o=load(fname);
logPost = [logPost; o.logpo2];
params = [params; o.x2];
end
end
figure;
subplot(2,1,1)
plot(logPost)
subplot(2,1,2)
plot(params(:,j))
title(['parameter ' int2str(j)])

123
matlab/score.m
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@ -1,123 +0,0 @@
function [DLIK] = score(T,R,Q,H,P,Y,DT,DYss,DOm,DH,DP,start,mf,kalman_tol,riccati_tol)
% function [DLIK] = score(T,R,Q,H,P,Y,DT,DYss,DOm,DH,DP,start,mf,kalman_tol,riccati_tol)
%
% computes the derivative of the log-likelihood function of
% a state space model (notation as in kalman_filter.m in DYNARE
% thanks to Nikolai Iskrev
%
% NOTE: the derivative matrices (DT,DR ...) are 3-dim. arrays with last
% dimension equal to the number of structural parameters
% Copyright © 2009-2017 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare. If not, see <http://www.gnu.org/licen
k = size(DT,3); % number of structural parameters
smpl = size(Y,2); % Sample size.
mm = size(T,2); % Number of state variables.
a = zeros(mm,1); % State vector.
Om = R*Q*transpose(R); % Variance of R times the vector of structural innovations.
t = 0; % Initialization of the time index.
oldK = 0;
notsteady = 1; % Steady state flag.
F_singular = 1;
DLIK = zeros(k,1); % Initialization of the score.
Da = zeros(mm,k); % State vector.
Dv = zeros(length(mf),k); % observation vector.
% for ii = 1:k
% DOm = DR(:,:,ii)*Q*transpose(R) + R*DQ(:,:,ii)*transpose(R) + R*Q*transpose(DR(:,:,ii));
% end
while notsteady & t<smpl
t = t+1;
v = Y(:,t)-a(mf);
F = P(mf,mf) + H;
if rcond(F) < kalman_tol
if ~all(abs(F(:))<kalman_tol)
return
else
a = T*a;
P = T*P*transpose(T)+Om;
end
else
F_singular = 0;
iF = inv(F);
K = P(:,mf)*iF;
[DK,DF,DP1] = computeDKalman(T,DT,DOm,P,DP,DH,mf,iF,K);
for ii = 1:k
Dv(:,ii) = -Da(mf,ii)-DYss(mf,ii);
Da(:,ii) = DT(:,:,ii)*(a+K*v) + T*(Da(:,ii)+DK(:,:,ii)*v + K*Dv(:,ii));
if t>=start
DLIK(ii,1) = DLIK(ii,1) + trace( iF*DF(:,:,ii) ) + 2*Dv(:,ii)'*iF*v - v'*(iF*DF(:,:,ii)*iF)*v;
end
end
a = T*(a+K*v);
P = T*(P-K*P(mf,:))*transpose(T)+Om;
DP = DP1;
end
notsteady = max(max(abs(K-oldK))) > riccati_tol;
oldK = K;
end
if F_singular
error('The variance of the forecast error remains singular until the end of the sample')
end
for ii = 1:k
tmp0(:,:,ii) = iF*DF(:,:,ii)*iF;
end
if t < smpl
t0 = t+1;
while t < smpl
t = t+1;
v = Y(:,t)-a(mf);
for ii = 1:k
Dv(:,ii) = -Da(mf,ii)-DYss(mf,ii);
Da(:,ii) = DT(:,:,ii)*(a+K*v) + T*(Da(:,ii)+DK(:,:,ii)*v + K*Dv(:,ii));
if t>=start
DLIK(ii,1) = DLIK(ii,1) + trace( iF*DF(:,:,ii) ) + 2*Dv(:,ii)'*iF*v - v'*(iF*DF(:,:,ii)*iF)*v;
end
end
a = T*(a+K*v);
end
for ii = 1:k
% DLIK(ii,1) = DLIK(ii,1) + (smpl-t0+1)*trace( iF*DF(:,:,ii) );
end
end
DLIK = DLIK/2;
% end of main function
function [DK,DF,DP1] = computeDKalman(T,DT,DOm,P,DP,DH,mf,iF,K)
k = size(DT,3);
tmp = P-K*P(mf,:);
for ii = 1:k
DF(:,:,ii) = DP(mf,mf,ii) + DH(:,:,ii);
DiF(:,:,ii) = -iF*DF(:,:,ii)*iF;
DK(:,:,ii) = DP(:,mf,ii)*iF + P(:,mf)*DiF(:,:,ii);
Dtmp = DP(:,:,ii) - DK(:,:,ii)*P(mf,:) - K*DP(mf,:,ii);
DP1(:,:,ii) = DT(:,:,ii)*tmp*T' + T*Dtmp*T' + T*tmp*DT(:,:,ii)' + DOm(:,:,ii);
end
% end of computeDKalman

28
matlab/shiftS.m
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@ -1,28 +0,0 @@
function S = shiftS(S,n)
%function S = shiftS(S,n)
%
% Removes the first n elements of a one dimensional cell array.
% Copyright © 2013-2014 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare. If not, see <https://www.gnu.org/licenses/>.
if length(S) >= n+1
S = S(n+1:end);
else
S = {};
end
end