adding metropolis_run_analysis. For now, this function plots the posterior and one chosen parameter during the Metropolis iterations
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function metropolis_run_analysis(M,basetopt,j)
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%function metropolis_run_analysis(M)
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% analizes Metropolis runs
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%
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% INPUTS
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% M: (struct) Model structure
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% basetopt: (struct) Estimated parameters structure
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% j: (int) Index of estimated paramter
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%
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% OUTPUTS
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% none
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%
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% SPECIAL REQUIREMENTS
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% none
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% Copyright (C) 2003-2009, 2010, 2011 Dynare Team
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%
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% This file is part of Dynare.
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%
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% Dynare is free software: you can redistribute it and/or modify
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% it under the terms of the GNU General Public License as published by
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% the Free Software Foundation, either version 3 of the License, or
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% (at your option) any later version.
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%
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% Dynare is distributed in the hope that it will be useful,
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% but WITHOUT ANY WARRANTY; without even the implied warranty of
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% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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% GNU General Public License for more details.
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%
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% You should have received a copy of the GNU General Public License
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% along with Dynare. If not, see <http://www.gnu.org/licenses/>.
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load([M.fname '/metropolis/' M.fname '_mh_history'])
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nblck = record.Nblck;
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ndraws = sum(record.MhDraws(:,1));
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logPost = [];
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params = [];
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blck = 1;
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for i=1:record.LastFileNumber
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o=load([M.fname '/metropolis/' M.fname '_mh' int2str(i) '_blck' ...
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int2str(blck)]);
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logPost = [logPost; o.logpo2];
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params = [params; o.x2];
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end
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figure;
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subplot(2,1,1)
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plot(logPost)
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subplot(2,1,2)
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plot(params(:,j))
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title(['parameter ' int2str(j)])
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