1) Several bug fixes for making the remote threads work properly under the Always/Open mode;
2) small cosmethics;time-shift
Marco Ratto
parent
f743f0375d
commit
0e98d4266c
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@ -47,26 +47,30 @@ function [fOutVar,nBlockPerCPU, totCPU] = masterParallelMan(Parallel,fBlock,nBlo
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%
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%
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% You should have received a copy of the GNU General Public License
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% You should have received a copy of the GNU General Public License
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% along with Dynare. If not, see <http://www.gnu.org/licenses/>.
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% along with Dynare. If not, see <http://www.gnu.org/licenses/>.
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% Delete the traces (if exists) of last section computations.
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persistent initialize
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persistent initialize
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if isempty(initialize),
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if isempty(initialize),
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mydelete(['P_slave_*End.txt']);
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mydelete(['P_slave_*End.txt']);
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mydelete(['slaveParallel_input*.mat']);
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mydelete(['slaveParallel_input*.mat']);
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initialize = 0;
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initialize = 0;
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pause(1),
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pause(1),
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end
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end
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totCPU=0;
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totCPU=0;
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% Determine my hostname and my working directory
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% Determine my hostname and my working directory
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DyMo=pwd;
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DyMo=pwd;
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fInputVar.DyMo=DyMo;
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fInputVar.DyMo=DyMo;
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if isunix || (~matlab_ver_less_than('7.4') && ismac) ,
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if isunix || (~matlab_ver_less_than('7.4') && ismac) ,
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% [tempo, MasterName]=system(['ifconfig | grep ''inet addr:''| grep -v ''127.0.0.1'' | cut -d: -f2 | awk ''{ print $1}''']);
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% [tempo, MasterName]=system(['ifconfig | grep ''inet addr:''| grep -v ''127.0.0.1'' | cut -d: -f2 | awk ''{ print $1}''']);
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[tempo, MasterName]=system('hostname --fqdn');
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[tempo, MasterName]=system('hostname --fqdn');
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else
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else
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[tempo, MasterName]=system('hostname');
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[tempo, MasterName]=system('hostname');
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end
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end
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MasterName=deblank(MasterName);
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MasterName=deblank(MasterName);
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fInputVar.MasterName = MasterName;
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fInputVar.MasterName = MasterName;
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@ -131,6 +135,7 @@ for j=1:totCPU,
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end
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end
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pause(1); % wait for possibly local alive CPU to start the new job or close by internal criteria
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pause(1); % wait for possibly local alive CPU to start the new job or close by internal criteria
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newInstance = 0;
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newInstance = 0;
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if isempty( dir(['P_slave_',int2str(j),'End.txt'])); % check if j CPU is already alive
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if isempty( dir(['P_slave_',int2str(j),'End.txt'])); % check if j CPU is already alive
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fid1=fopen(['P_slave_',int2str(j),'End.txt'],'w+');
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fid1=fopen(['P_slave_',int2str(j),'End.txt'],'w+');
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fclose(fid1);
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fclose(fid1);
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@ -143,24 +148,24 @@ for j=1:totCPU,
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if Parallel(indPC).Local == 1 & newInstance, % run on the local machine
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if Parallel(indPC).Local == 1 & newInstance, % run on the local machine
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if isunix || (~matlab_ver_less_than('7.4') && ismac),
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if isunix || (~matlab_ver_less_than('7.4') && ismac),
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if exist('OCTAVE_VERSION')
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if exist('OCTAVE_VERSION')
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% command1=['octave --eval fParallel\(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',\''',fname,'\''\) &'];
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% command1=['octave --eval fParallel\(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',\''',fname,'\''\) &'];
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command1=['octave --eval slaveParallel\(',int2str(j),',',int2str(indPC),'\) &'];
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command1=['octave --eval slaveParallel\(',int2str(j),',',int2str(indPC),'\) &'];
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else
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else
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% command1=['matlab -nosplash -nodesktop -minimize -r fParallel\(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',\''',fname,'\''\) &'];
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% command1=['matlab -nosplash -nodesktop -minimize -r fParallel\(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',\''',fname,'\''\) &'];
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command1=['matlab -nosplash -nodesktop -minimize -r slaveParallel\(',int2str(j),',',int2str(indPC),'\) &'];
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command1=['matlab -nosplash -nodesktop -minimize -r slaveParallel\(',int2str(j),',',int2str(indPC),'\) &'];
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end
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end
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else
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else
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if exist('OCTAVE_VERSION')
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if exist('OCTAVE_VERSION')
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% command1=['start /B psexec -W ',DyMo, ' -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)),' -low octave --eval fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')'];
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% command1=['start /B psexec -W ',DyMo, ' -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)),' -low octave --eval fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')'];
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command1=['start /B psexec -W ',DyMo, ' -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)),' -low octave --eval slaveParallel(',int2str(j),',',int2str(indPC),')'];
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command1=['start /B psexec -W ',DyMo, ' -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)),' -low octave --eval slaveParallel(',int2str(j),',',int2str(indPC),')'];
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else
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else
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% command1=['start /B psexec -W ',DyMo, ' -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)),' -low matlab -nosplash -nodesktop -minimize -r fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')'];
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% command1=['start /B psexec -W ',DyMo, ' -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)),' -low matlab -nosplash -nodesktop -minimize -r fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')'];
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command1=['start /B psexec -W ',DyMo, ' -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)),' -low matlab -nosplash -nodesktop -minimize -r slaveParallel(',int2str(j),',',int2str(indPC),')'];
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command1=['start /B psexec -W ',DyMo, ' -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)),' -low matlab -nosplash -nodesktop -minimize -r slaveParallel(',int2str(j),',',int2str(indPC),')'];
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end
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end
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end
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end
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elseif Parallel(indPC).Local==0,
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elseif Parallel(indPC).Local==0,
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if isunix || (~matlab_ver_less_than('7.4') && ismac),
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if isunix || (~matlab_ver_less_than('7.4') && ismac),
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% [tempo, RemoteName]=system(['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' "ifconfig | grep \''inet addr:\''| grep -v \''127.0.0.1\'' | cut -d: -f2 | awk \''{ print $1}\''"']);
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% [tempo, RemoteName]=system(['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' "ifconfig | grep \''inet addr:\''| grep -v \''127.0.0.1\'' | cut -d: -f2 | awk \''{ print $1}\''"']);
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[tempo, RemoteName]=system(['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' "hostname --fqdn"']);
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[tempo, RemoteName]=system(['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' "hostname --fqdn"']);
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RemoteName=RemoteName(1:end-1);
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RemoteName=RemoteName(1:end-1);
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RemoteFolder = Parallel(indPC).RemoteFolder;
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RemoteFolder = Parallel(indPC).RemoteFolder;
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@ -177,8 +182,7 @@ for j=1:totCPU,
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end
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end
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end
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end
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if remoteFlag,
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if remoteFlag,
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if j==nCPU0+1,
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if (j==nCPU0+1) & newInstance, % clean remote folder
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if newInstance, % clean remote folder
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if isunix || (~matlab_ver_less_than('7.4') && ismac),
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if isunix || (~matlab_ver_less_than('7.4') && ismac),
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system(['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' rm -fr ',Parallel(indPC).RemoteFolder,'/*']);
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system(['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' rm -fr ',Parallel(indPC).RemoteFolder,'/*']);
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else
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else
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@ -191,60 +195,62 @@ for j=1:totCPU,
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end
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end
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end
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end
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end
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end
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end
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end
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if isunix || (~matlab_ver_less_than('7.4') && ismac),
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if isunix || (~matlab_ver_less_than('7.4') && ismac),
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system(['scp ',fname,'_input.mat ',Parallel(indPC).user,'@',Parallel(indPC).PcName,':',Parallel(indPC).RemoteFolder]);
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% system(['scp ',fname,'_input.mat ',Parallel(indPC).user,'@',Parallel(indPC).PcName,':',Parallel(indPC).RemoteFolder]);
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for jfil=1:size(NamFileInput,1)
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for jfil=1:size(NamFileInput,1)
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if ~isempty(NamFileInput{jfil,1})
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if ~isempty(NamFileInput{jfil,1})
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system(['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' mkdir -p ',Parallel(indPC).RemoteFolder,'/',NamFileInput{jfil,1}])
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system(['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' mkdir -p ',Parallel(indPC).RemoteFolder,'/',NamFileInput{jfil,1}])
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end
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system(['scp ',NamFileInput{jfil,1},NamFileInput{jfil,2},' ',Parallel(indPC).user,'@',Parallel(indPC).PcName,':',Parallel(indPC).RemoteFolder,'/',NamFileInput{jfil,1}]);
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end
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end
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system(['scp slaveJob',int2str(j),'.mat ',Parallel(indPC).user,'@',Parallel(indPC).PcName,':',Parallel(indPC).RemoteFolder]);
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system(['scp ',NamFileInput{jfil,1},NamFileInput{jfil,2},' ',Parallel(indPC).user,'@',Parallel(indPC).PcName,':',Parallel(indPC).RemoteFolder,'/',NamFileInput{jfil,1}]);
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if newInstance,
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end
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system(['scp slaveParallel_input',int2str(j),'.mat ',Parallel(indPC).user,'@',Parallel(indPC).PcName,':',Parallel(indPC).RemoteFolder]);
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system(['scp slaveJob',int2str(j),'.mat ',Parallel(indPC).user,'@',Parallel(indPC).PcName,':',Parallel(indPC).RemoteFolder]);
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end
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if newInstance,
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else
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system(['scp slaveParallel_input',int2str(j),'.mat ',Parallel(indPC).user,'@',Parallel(indPC).PcName,':',Parallel(indPC).RemoteFolder]);
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copyfile([fname,'_input.mat'], ['\\',Parallel(indPC).PcName,'\',Parallel(indPC).RemoteDrive,'$\',Parallel(indPC).RemoteFolder]);
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end
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for jfil=1:size(NamFileInput,1)
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else
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copyfile([NamFileInput{jfil,1},NamFileInput{jfil,2}],['\\',Parallel(indPC).PcName,'\',Parallel(indPC).RemoteDrive,'$\',Parallel(indPC).RemoteFolder,'\',NamFileInput{jfil,1}])
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% copyfile([fname,'_input.mat'], ['\\',Parallel(indPC).PcName,'\',Parallel(indPC).RemoteDrive,'$\',Parallel(indPC).RemoteFolder])
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end
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for jfil=1:size(NamFileInput,1)
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copyfile(['slaveJob',int2str(j),'.mat'], ['\\',Parallel(indPC).PcName,'\',Parallel(indPC).RemoteDrive,'$\',Parallel(indPC).RemoteFolder]);
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if ~isempty(NamFileInput{jfil,1})
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if newInstance,
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mkdir(['\\',Parallel(indPC).PcName,'\',Parallel(indPC).RemoteDrive,'$\',Parallel(indPC).RemoteFolder,'\',NamFileInput{jfil,1}]);
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copyfile(['slaveParallel_input',int2str(j),'.mat'], ['\\',Parallel(indPC).PcName,'\',Parallel(indPC).RemoteDrive,'$\',Parallel(indPC).RemoteFolder]);
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end
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end
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copyfile([NamFileInput{jfil,1},NamFileInput{jfil,2}],['\\',Parallel(indPC).PcName,'\',Parallel(indPC).RemoteDrive,'$\',Parallel(indPC).RemoteFolder,'\',NamFileInput{jfil,1}])
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end
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copyfile(['slaveJob',int2str(j),'.mat'], ['\\',Parallel(indPC).PcName,'\',Parallel(indPC).RemoteDrive,'$\',Parallel(indPC).RemoteFolder]);
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if newInstance,
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copyfile(['slaveParallel_input',int2str(j),'.mat'], ['\\',Parallel(indPC).PcName,'\',Parallel(indPC).RemoteDrive,'$\',Parallel(indPC).RemoteFolder]);
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end
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end
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end
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end
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end
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end
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if newInstance,
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if newInstance,
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if isunix || (~matlab_ver_less_than('7.4') && ismac),
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if isunix || (~matlab_ver_less_than('7.4') && ismac),
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if exist('OCTAVE_VERSION'),
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if exist('OCTAVE_VERSION'),
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command1=['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' "cd ',Parallel(indPC).RemoteFolder, '; octave --eval fParallel\(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',\''',fname,'\''\);" &'];
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command1=['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' "cd ',Parallel(indPC).RemoteFolder, '; octave --eval slaveParallel\(',int2str(j),',',int2str(indPC),'\);" &'];
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else
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command1=['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' "cd ',Parallel(indPC).RemoteFolder, '; matlab -nosplash -nodesktop -minimize -r slaveParallel\(',int2str(j),',',int2str(indPC),'\);" &'];
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end
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else
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else
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command1=['ssh ',Parallel(indPC).user,'@',Parallel(indPC).PcName,' "cd ',Parallel(indPC).RemoteFolder, '; matlab -nosplash -nodesktop -minimize -r fParallel\(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',\''',fname,'\''\);" &'];
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if ~strcmp(Parallel(indPC).PcName,MasterName), % run on a remote machine
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end
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if exist('OCTAVE_VERSION'),
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else
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command1=['start /B psexec \\',Parallel(indPC).PcName,' -e -u ',Parallel(indPC).user,' -p ',Parallel(indPC).passwd,' -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteFolder,'\ -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)), ...
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if ~strcmp(Parallel(indPC).PcName,MasterName), % run on a remote machine
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' -low octave --eval slaveParallel(',int2str(j),',',int2str(indPC),')'];
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if exist('OCTAVE_VERSION'),
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else
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command1=['start /B psexec \\',Parallel(indPC).PcName,' -e -u ',Parallel(indPC).user,' -p ',Parallel(indPC).passwd,' -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteFolder,'\ -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)), ...
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command1=['start /B psexec \\',Parallel(indPC).PcName,' -e -u ',Parallel(indPC).user,' -p ',Parallel(indPC).passwd,' -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteFolder,'\ -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)), ...
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' -low octave --eval fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')'];
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' -low matlab -nosplash -nodesktop -minimize -r slaveParallel(',int2str(j),',',int2str(indPC),')'];
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else
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end
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command1=['start /B psexec \\',Parallel(indPC).PcName,' -e -u ',Parallel(indPC).user,' -p ',Parallel(indPC).passwd,' -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteFolder,'\ -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)), ...
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else % run on the local machine via the network
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' -low matlab -nosplash -nodesktop -minimize -r fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')'];
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if exist('OCTAVE_VERSION'),
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end
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command1=['start /B psexec \\',Parallel(indPC).PcName,' -e -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteFolder,'\ -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)), ...
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else % run on the local machine via the network
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' -low octave --eval slaveParallel(',int2str(j),',',int2str(indPC),')'];
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if exist('OCTAVE_VERSION'),
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else
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command1=['start /B psexec \\',Parallel(indPC).PcName,' -e -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteFolder,'\ -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)), ...
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command1=['start /B psexec \\',Parallel(indPC).PcName,' -e -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteFolder,'\ -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)), ...
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' -low octave --eval fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')'];
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' -low matlab -nosplash -nodesktop -minimize -r slaveParallel(',int2str(j),',',int2str(indPC),')'];
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else
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end
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command1=['start /B psexec \\',Parallel(indPC).PcName,' -e -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteFolder,'\ -a ',int2str(Parallel(indPC).NumCPU(j-nCPU0)), ...
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' -low matlab -nosplash -nodesktop -minimize -r fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')'];
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end
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end
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end
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end
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end
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end
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end
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end
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end
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fprintf(fid,'%s\n',command1);
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fprintf(fid,'%s\n',command1);
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end
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end
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@ -268,8 +274,8 @@ if exist('OCTAVE_VERSION'),
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printf('\n');
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printf('\n');
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else
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else
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hfigstatus = figure('name',['Parallel ',fname],...
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hfigstatus = figure('name',['Parallel ',fname],...
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'MenuBar', 'none', ...
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'MenuBar', 'none', ...
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'NumberTitle','off');
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'NumberTitle','off');
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vspace = 0.1;
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vspace = 0.1;
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ncol = ceil(totCPU/10);
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ncol = ceil(totCPU/10);
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hspace = 0.9/ncol;
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hspace = 0.9/ncol;
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@ -277,16 +283,19 @@ else
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jrow = mod(j-1,10)+1;
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jrow = mod(j-1,10)+1;
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jcol = ceil(j/10);
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jcol = ceil(j/10);
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hstatus(j) = axes('position',[0.05/ncol+(jcol-1)/ncol 0.92-vspace*(jrow-1) 0.9/ncol 0.03], ...
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hstatus(j) = axes('position',[0.05/ncol+(jcol-1)/ncol 0.92-vspace*(jrow-1) 0.9/ncol 0.03], ...
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'box','on','xtick',[],'ytick',[],'xlim',[0 1],'ylim',[0 1]);
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'box','on','xtick',[],'ytick',[],'xlim',[0 1],'ylim',[0 1]);
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end
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end
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||||||
cumBlockPerCPU = cumsum(nBlockPerCPU);
|
cumBlockPerCPU = cumsum(nBlockPerCPU);
|
||||||
end
|
end
|
||||||
pcerdone = NaN(1,totCPU);
|
pcerdone = NaN(1,totCPU);
|
||||||
while (1)
|
while (1)
|
||||||
|
|
||||||
waitbarString = '';
|
waitbarString = '';
|
||||||
statusString = '';
|
statusString = '';
|
||||||
pause(1)
|
pause(1)
|
||||||
|
|
||||||
stax = dir(['comp_status_',fname,'*.mat']);
|
stax = dir(['comp_status_',fname,'*.mat']);
|
||||||
|
|
||||||
for j=1:length(stax),
|
for j=1:length(stax),
|
||||||
|
|
||||||
try
|
try
|
||||||
|
|
@ -307,17 +316,33 @@ while (1)
|
||||||
if exist('OCTAVE_VERSION'),
|
if exist('OCTAVE_VERSION'),
|
||||||
printf([statusString,'\r'], 100 .* pcerdone);
|
printf([statusString,'\r'], 100 .* pcerdone);
|
||||||
else
|
else
|
||||||
|
|
||||||
figure(hfigstatus),
|
figure(hfigstatus),
|
||||||
for j=1:length(stax),
|
try
|
||||||
axes(hstatus(idCPU(j))),
|
for j=1:length(stax)
|
||||||
hpat = findobj(hstatus(idCPU(j)),'Type','patch');
|
|
||||||
if ~isempty(hpat),
|
axes(hstatus(idCPU(j))),
|
||||||
set(hpat,'XData',[0 0 pcerdone(j) pcerdone(j)])
|
hpat = findobj(hstatus(idCPU(j)),'Type','patch');
|
||||||
else
|
|
||||||
patch([0 0 pcerdone(j) pcerdone(j)],[0 1 1 0],'r','EdgeColor','r')
|
|
||||||
|
if ~isempty(hpat),
|
||||||
|
set(hpat,'XData',[0 0 pcerdone(j) pcerdone(j)])
|
||||||
|
else
|
||||||
|
patch([0 0 pcerdone(j) pcerdone(j)],[0 1 1 0],'r','EdgeColor','r')
|
||||||
|
end
|
||||||
|
title([status_Title{j},' - ',status_String{j}]);
|
||||||
|
|
||||||
end
|
end
|
||||||
title([status_Title{j},' - ',status_String{j}]);
|
catch
|
||||||
|
|
||||||
|
E='ERRORE in while cycle masterParallelMann!'
|
||||||
|
j
|
||||||
|
if j>1
|
||||||
|
j=j-1
|
||||||
|
end
|
||||||
|
j
|
||||||
end
|
end
|
||||||
|
|
||||||
end
|
end
|
||||||
if isempty(dir(['P_',fname,'_*End.txt']))
|
if isempty(dir(['P_',fname,'_*End.txt']))
|
||||||
mydelete(['comp_status_',fname,'*.mat'])
|
mydelete(['comp_status_',fname,'*.mat'])
|
||||||
|
|
|
||||||
Loading…
Reference in New Issue